RNA id: TCONS_00041048


Basic Information

Item Value
RNA id TCONS_00041048
length 780
RNA type mRNA
GC content 0.39
exon number 5
gene id XLOC_020839
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 6829466 ~ 6854584 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atcacgacgaTCACTACAATCAGCACAGATGCAGCGGCGCAGAGGAACGCGATGTTAAATACAGATGAGCCTGAACTGTcatttgctgctgctgctgtttcttGCAACTGGGTTTTTGGGAGCTGATTTATACGGAATTTCAGTGATAGAGGGAGATCCAGTCACTCTGCACACTAATGTTACAAAAACCAAACACGAGGAAGTTAAATATTACTTTGACGACACTCTTATCGCTCGACTCGCTAAAGATCTCAGTTTTGCTTGCACTGATGTGCAGTGTAATAAAGCTAATGAGAGTTTCAGAGGCCGACTGAAGCTGGACTATGAAACTGGATCCCTGACCATCATGAACACCACAAGCACAGACTCTGGAGGTTATCACCAACAGATCATCGGCAGTGGCACCAATTATGAAAAAACCATCAATGTTTCTGTCCATAATGGAGTGAAGAAGGGGTCTGCTACTTCCAATTCTATTGAAAATAATAACTTAAATGATTCCAGTTCGTCTTCAGCCAATGTAACAGGAATatgtgttgctgttgttttttttaatgctgctGTTGCCTTTGCTGCCTTTTAGTTTTATAAGTGTCAAACAGGAACTTAAAGTAAGTATTACAGAAAGCTAATTTAAGAAGATAAAAACGAGAAATTTGTAGTAtacaaaaaagaaatgtaaaaatgtaaatttgttgtAATTAACCAAAGTACTATATGCTTATTGTTCAAATAGACATCACAGGAAGGAGAACAGTGAACAGGTGAGCACTTAACCAC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000125750

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00041047 lncRNA downstream 10938 6809528 ~ 6818528 (-) True XLOC_020838
TCONS_00041046 lncRNA downstream 15663 6809366 ~ 6813803 (-) False XLOC_020838
TCONS_00042324 lncRNA downstream 76440 6727540 ~ 6753026 (-) True XLOC_020835
TCONS_00042323 lncRNA downstream 117950 6696517 ~ 6711516 (-) True XLOC_020834
TCONS_00041938 lncRNA downstream 263505 6563646 ~ 6565961 (-) True XLOC_020830
TCONS_00041059 lncRNA upstream 146462 6996047 ~ 7006974 (-) True XLOC_020846
TCONS_00041061 lncRNA upstream 160281 7009866 ~ 7010767 (-) True XLOC_020847
TCONS_00041939 lncRNA upstream 573299 7422884 ~ 7423468 (-) True XLOC_020851
TCONS_00041066 lncRNA upstream 589670 7439255 ~ 7442462 (-) False XLOC_020852
TCONS_00041067 lncRNA upstream 589744 7439329 ~ 7442462 (-) True XLOC_020852
TCONS_00041045 mRNA downstream 27590 6788761 ~ 6801876 (-) True XLOC_020837
TCONS_00041044 mRNA downstream 51490 6764980 ~ 6777976 (-) True XLOC_020836
TCONS_00041042 mRNA downstream 178084 6632702 ~ 6651382 (-) True XLOC_020832
TCONS_00041040 mRNA downstream 266848 6546697 ~ 6562618 (-) True XLOC_020829
TCONS_00041036 mRNA downstream 330389 6487048 ~ 6499077 (-) False XLOC_020826
TCONS_00041049 mRNA upstream 31860 6881445 ~ 6884981 (-) True XLOC_020840
TCONS_00041050 mRNA upstream 72421 6922006 ~ 6923086 (-) False XLOC_020841
TCONS_00041051 mRNA upstream 72610 6922195 ~ 6923347 (-) True XLOC_020841
TCONS_00041052 mRNA upstream 82714 6932299 ~ 6941098 (-) True XLOC_020842
TCONS_00041053 mRNA upstream 102522 6952107 ~ 6960943 (-) False XLOC_020843
TCONS_00041043 other downstream 166560 6661712 ~ 6662906 (-) True XLOC_020833
TCONS_00041041 other downstream 227879 6587550 ~ 6601587 (-) True XLOC_020831
TCONS_00041038 other downstream 309440 6515397 ~ 6520026 (-) True XLOC_020827
TCONS_00041035 other downstream 353208 6476142 ~ 6476258 (-) True XLOC_020825
TCONS_00041030 other downstream 424556 6401579 ~ 6404910 (-) True XLOC_020820
TCONS_00041072 other upstream 765087 7614672 ~ 7617991 (-) False XLOC_020858
TCONS_00041073 other upstream 766154 7615739 ~ 7617991 (-) True XLOC_020858
TCONS_00041090 other upstream 1496490 8346075 ~ 8346200 (-) True XLOC_020873
TCONS_00041096 other upstream 1657962 8507547 ~ 8509177 (-) True XLOC_020880
TCONS_00041137 other upstream 2864629 9714214 ~ 9714331 (-) True XLOC_020901

Expression Profile

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