RNA id: TU1262829



Basic Information


Item Value
RNA id TU1262829
length 2165
lncRNA type read_through
GC content 0.46
exon number 3
gene id G1110714
representative True

Chromosome Information


Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 74226460 ~ 74419579 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GAGCAGTTGGACAGCCATACTCTCACAGAAGCCCTCCATGGCGAACTTGGAGGCAGTGTAGACATCGTTGAACACTACACTGTAGACCCATAACACTGCTCATGACCACGATGTGTCCCGCCCGCCTCTTCTTCATGTCAGGCATGACCTCTTTAATCATCCTCACCACGCCAAAGAAGTTGGTCTCAAACACCCTCTTCATGTCCTCGATACTGATGCTTTCCACGGGTCCCAACAAGCCCACACCTGCATTGTTGACTGAGGGGAGACTCAAAGATAGAGACAAGGGTTACAGACCTGTAGTTTCACTACCGATGCTATACAGATACTACACTGTAGCCTTCTGTACAGACAACTATCTTTAAGGTTTAGAGCTGAGGCTCTAAAGCTTTAGTCACAACTGATGttttgtaggccgtcattgttttatttaaccgttatttaactaggcaagtcagttaagaacaaattcttatttacaatgacggccaaccagAAGGCTAaaagcctcctgcggggacgggggctgggattaaaaatacaaaataaattaaatacaaatataggacaaaacacacatcacgacaagagagaaaacacaacactacgtaaagagagacctaagacaacaacatagcaaggcagcaacatatgacaacacagcatggtacgaacacaacatgacaacaacatggtagcaacacatcatggcagcagcacaacatggtagcaggacaaaacagggtacaaacatcgGGCACAgaaaacagcacaaagggcaagagacaacaatacataattgaaagcagccacaactgtcagtaagagtgtccatgattgagtctttgaatgaagagattgagataaaaatgtccagtttgagtgtttgttgcagctcgttccagtcgctagctgcagcgaactgaaaagacgagccagggatgtgtgtgctttggggacctttaacagaatgtgactggcagaacgggtgttgtatgtggaggatgagggctgcagtagatatctcagatagggggagtgtGGCTTAagagggtttttataaataagcatcaaccagtgggtcttgcaacgggtatacagagatgaccagtttacaggggagtatagagtgcagtgatgtgtcctataaggagcattggtggcaaatctgatggccgaatggtaaaggacttctagccgctcgagagcgcccttacctgctgatctataaattatgtctccgctCTGAATCAGGGTTGGTTTGGCAGCTGGGCTGAAGgagattacgatagaggaaaccaagtctagatttaactttagcctgcagctttttaatttaaaaaaaaaaaaaaaaatgttgaattttacccccttttttctctccaatttcgtggtttttgtagctactatcttgtctcatcgctacaactcccgtacgggctcgggagagacaaaggttgaaagtcatgcgtcctccgatacacaacccaaccattcttaacacagcgcgcatccaacccggaagccagccgcaccaatgtgtcggaggaaacacagtgcacctggcaaccttggttagtgtgcactgcgcccggcccgccacaggagtcgctggtgcgcgatgagacaaggacatccctaccggccaacccctccctaacccggacgacgtagcctgcagctttgatatgtgctgagagaaggacagtgtatcgTCTAGCcgtactcccaagtacttgtatgaggtgacaacctcaagctctaaaccctcagaggtagtaatcacacctgtggggagaggggcattcttcttatcaaaccacatgacctttgttttggaggtgttcagaacaaggttaagggtagagaaagcttgttggacactaagaaagctttgttgtagagcatttaacacaaaatcagTTGAGGGGCCAGCTTAGTAtgagactgtatcatctgcatataaatgaatgagagagcttcctactgcctgagctatgttgttgatgtaaattgagaagagcgtggggcctaggattgagccttagagtactcccttggtgacaggcagtggctgagagagcagatgttctgactttatacactgcactctttgtgAGATgtagttaacaaaccaggccaaagacccctcagagacaccaata

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1262786 lncRNA downstream 56091 74170090 ~ 74170369 (-) True G1110682
TU1262774 lncRNA downstream 77340 74148894 ~ 74149120 (-) True G1110670
TU1262769 lncRNA downstream 85761 74140474 ~ 74140699 (-) True G1110665
TU1262760 lncRNA downstream 92819 74133109 ~ 74133641 (-) True G1110656
TU1262754 lncRNA downstream 106296 74118329 ~ 74120164 (-) True G1110652
TU1263009 lncRNA upstream 96522 74516101 ~ 74516349 (-) True G1110875
TU1263027 lncRNA upstream 111645 74531224 ~ 74614478 (-) True G1110888
TU1263083 lncRNA upstream 220138 74639717 ~ 74639942 (-) True G1110935
TU1263088 lncRNA upstream 230141 74649720 ~ 74649939 (-) True G1110940
TU1263090 lncRNA upstream 231614 74651193 ~ 74651430 (-) True G1110942
LOC110538422 mRNA downstream 147144 74071337 ~ 74079316 (-) False LOC110538422
XM_036938391.1 mRNA downstream 158362 74065558 ~ 74068098 (-) True LOC110538420
XM_036938392.1 mRNA downstream 161021 74060992 ~ 74065439 (-) True LOC110538421
XM_021625238.2 mRNA downstream 161396 74060992 ~ 74065064 (-) False LOC110538421
XM_021625938.2 mRNA downstream 267107 73948838 ~ 73959353 (-) True LOC110538971
XM_021625219.2 mRNA upstream 145779 74565358 ~ 74577261 (-) False LOC110538409
XM_036938403.1 mRNA upstream 145779 74565358 ~ 74577263 (-) True LOC110538409
LOC118937742 mRNA upstream 161322 74580901 ~ 74584090 (-) True LOC118937742
XM_021625215.2 mRNA upstream 168870 74588449 ~ 74591846 (-) True LOC110538408
XM_021625214.2 mRNA upstream 185539 74605118 ~ 74610785 (-) True LOC110538407
TU1262811 other downstream 21269 74204221 ~ 74205191 (-) True G1110701
TU1262718 other downstream 147183 74068285 ~ 74079277 (-) True LOC110538422
TU1262444 other downstream 612192 73612577 ~ 73614268 (-) True G1110374
TU1262429 other downstream 631102 73582194 ~ 73595358 (-) True G1110369
TU1262345 other downstream 756851 73468411 ~ 73469609 (-) True LOC110538455
TU1263089 other upstream 230704 74650283 ~ 74650763 (-) True G1110941
TU1263616 other upstream 398396 74817975 ~ 74824590 (-) True G1111424
TU1263648 other upstream 460919 74880498 ~ 74880807 (-) True G1111451
TU1263884 other upstream 770606 75190185 ~ 75190431 (-) True G1111672
TU1265090 other upstream 1376871 75796450 ~ 75796798 (-) True G1112697

Expression Profile


TU1262829 Expression in all Baseline Samples

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TU1262829 Expression in each Bioproject

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TU1262829 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
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