RNA id: TU1262211



Basic Information


Item Value
RNA id TU1262211
length 223
lncRNA type intronic
GC content 0.52
exon number 2
gene id G1110175
representative True

Chromosome Information


Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 74579179 ~ 74579609 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cgtcgatccagagcatcccaaacatgctcaatgggtgtcaTGCCTGcttacaACTGCCCAAACCATAAcccaaccaccaccatggggcactctgttcacaaaatTGACATCAGCAGaccactcgcccacacgatgccatctgcccggtacagttgaaactgggattaatGCGTGAAGAGCACACCTCTCCAGCTTGctagtggccatcaaaggtgagcatttg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1262180 lncRNA upstream 44163 74534589 ~ 74535016 (+) True G1110154
TU1262172 lncRNA upstream 80382 74495060 ~ 74498797 (+) True G1110146
TU1262098 lncRNA upstream 199911 74378980 ~ 74379268 (+) True G1110083
TU1262056 lncRNA upstream 272442 74304545 ~ 74306737 (+) False G1110045
TU1262057 lncRNA upstream 272442 74304545 ~ 74306737 (+) True G1110045
TU1262233 lncRNA downstream 25514 74605123 ~ 74606527 (+) False G1110195
TU1262234 lncRNA downstream 25514 74605123 ~ 74607679 (+) True G1110195
TU1262244 lncRNA downstream 60428 74640037 ~ 74640264 (+) True G1110204
TU1262245 lncRNA downstream 60834 74640443 ~ 74640729 (+) True G1110205
TU1262255 lncRNA downstream 79447 74659056 ~ 74659390 (+) True G1110215
XM_036938405.1 mRNA upstream 11970 74563904 ~ 74567209 (+) True LOC118937741
XM_021625222.2 mRNA upstream 27847 74545711 ~ 74551332 (+) False LOC110538412
XM_021625223.2 mRNA upstream 27847 74547221 ~ 74551332 (+) True LOC110538412
XM_036938402.1 mRNA upstream 46635 74530032 ~ 74532544 (+) True LOC118937740
XM_036938401.1 mRNA upstream 49356 74484158 ~ 74529823 (+) True LOC110538410
XM_021625206.2 mRNA downstream 31313 74610922 ~ 74622960 (+) False LOC110538404
XM_036938406.1 mRNA downstream 31313 74610922 ~ 74622960 (+) True LOC110538404
XM_021625211.2 mRNA downstream 43699 74623308 ~ 74632676 (+) False LOC110538405
XM_021625212.2 mRNA downstream 43701 74623310 ~ 74632676 (+) False LOC110538405
XM_021625207.2 mRNA downstream 43746 74623355 ~ 74632676 (+) False LOC110538405
TU1261780 other upstream 732385 73846255 ~ 73846794 (+) True G1109786
TU1261764 other upstream 744573 73833643 ~ 73834606 (+) True G1109778
TU1261395 other upstream 1193312 73384808 ~ 73385867 (+) True LOC110538462
TU1261422 other upstream 1273025 73305425 ~ 73306154 (+) True G1109505
TU1257805 other upstream 2560889 72017593 ~ 72018290 (+) True LOC110538241
TU1263295 other downstream 380657 74960266 ~ 75048356 (+) True G1111126
TU1264041 other downstream 839180 75418789 ~ 75423163 (+) True G1111805
TU1264215 other downstream 1165530 75745139 ~ 75745620 (+) True G1111961
TU1264225 other downstream 1171261 75750870 ~ 75753593 (+) True G1111970
TU1264251 other downstream 1204741 75784350 ~ 75786987 (+) False LOC110538360

Expression Profile