RNA id: TU1263160



Basic Information


Item Value
RNA id TU1263160
length 404
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G1111002
representative True

Chromosome Information


Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 74725298 ~ 74725701 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


acgcagttttccactcatctccctcccgaaTACGCACTAGATTATACGTGCTCCTGGGGTCCAGTTTCGTGAAGAACCGCGCctcgtgaaatgattccaccgccgtagcgatgagaggtagtgggtaactaaaaccCACCGTGAtggaattgagacctcgataatcaatgcacggacgcaaaccaccctcctttttcttcacaaaaaataaactcgaggagacgggtgacatggagggccgaatgtccCCCTGTCCcagagcttccgtgacatatgtctccatagccaacgtctcctcctgggacaaagggtacacgtgactcctgggcaGTGCAGCGTTTAgctggaggtttatcacgcaatccccccatcgatggggtggtaattgggtcaCCTTCTTTTTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1263159 lncRNA upstream 1396 74723602 ~ 74723902 (+) True G1111001
TU1263156 lncRNA upstream 6026 74718989 ~ 74719272 (+) True G1110998
TU1263133 lncRNA upstream 26673 74692663 ~ 74698625 (+) True G1110984
TU1263114 lncRNA upstream 44421 74680662 ~ 74680877 (+) True G1110966
TU1263112 lncRNA upstream 46550 74678531 ~ 74678748 (+) True G1110964
TU1263151 lncRNA downstream 39816 74765517 ~ 74766894 (+) True G1110993
TU1263141 lncRNA downstream 59114 74784815 ~ 74786587 (+) False G1110987
TU1263139 lncRNA downstream 60012 74785713 ~ 74786587 (+) False G1110987
TU1263140 lncRNA downstream 60012 74785713 ~ 74786587 (+) False G1110987
TU1263143 lncRNA downstream 60012 74785713 ~ 74786587 (+) True G1110987
XM_021625213.2 mRNA upstream 85809 74637224 ~ 74639489 (+) True LOC110538406
XM_021625208.2 mRNA upstream 92621 74623355 ~ 74632677 (+) False LOC110538405
XM_021625205.2 mRNA downstream 4833 74730534 ~ 74761760 (+) True LOC110538402
XM_021625193.2 mRNA downstream 44304 74770005 ~ 74776525 (+) False LOC110538400
XM_021625196.2 mRNA downstream 44304 74770005 ~ 74776525 (+) False LOC110538400
XM_021625197.2 mRNA downstream 44304 74770005 ~ 74776525 (+) False LOC110538400
XM_021625199.2 mRNA downstream 44304 74770005 ~ 74776525 (+) False LOC110538400
TU1261780 other upstream 878504 73846255 ~ 73846794 (+) True G1109786
TU1261764 other upstream 890692 73833643 ~ 73834606 (+) True G1109778
TU1261395 other upstream 1339431 73384808 ~ 73385867 (+) True LOC110538462
TU1261422 other upstream 1419144 73305425 ~ 73306154 (+) True G1109505
TU1257805 other upstream 2707008 72017593 ~ 72018290 (+) True LOC110538241
TU1263295 other downstream 234565 74960266 ~ 75048356 (+) True G1111126
TU1264041 other downstream 693088 75418789 ~ 75423163 (+) True G1111805
TU1264215 other downstream 1019438 75745139 ~ 75745620 (+) True G1111961
TU1264225 other downstream 1025169 75750870 ~ 75753593 (+) True G1111970
TU1264251 other downstream 1058649 75784350 ~ 75786987 (+) False LOC110538360

Expression Profile