RNA id: TU1263198


Basic Information

Item Value
RNA id TU1263198
length 326
lncRNA type intronic
GC content 0.41
exon number 1
gene id G1111036
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 74841292 ~ 74841617 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGTGTTGTCAAACCAAGTTCTAAGAATGTTCAAAACCTTATGTCATGCTCTAATGatgacagtggaggctggtgggaggagctataggaggacaggctcattgtaataactggaatggaataaatgggacggtatcaaacatatggaaaccgcacgtttgactccgttccattgattccatttcaaccattacaatgagcccatcctcctatagctccttccaccagcctccactgaatgACAATGCTTATGACCTTATTACACATGTTGATGTCAACAGTTCTTTGAAGTCTTTTTAATTCAACTAGAGTGATAAAGACACACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1263197 lncRNA upstream 924 74838703 ~ 74840368 (+) True G1111035
TU1263147 lncRNA upstream 4370 74832139 ~ 74836922 (+) True G1110989
TU1263141 lncRNA upstream 54705 74784815 ~ 74786587 (+) False G1110987
TU1263199 lncRNA downstream 181 74841798 ~ 74842395 (+) True G1111037
TU1263200 lncRNA downstream 1595 74843212 ~ 74844083 (+) True G1111038
TU1263203 lncRNA downstream 6445 74848062 ~ 74848291 (+) True G1111041
TU1263205 lncRNA downstream 7927 74849544 ~ 74849803 (+) True G1111043
TU1263206 lncRNA downstream 8874 74850491 ~ 74851142 (+) True G1111044
XM_021625189.2 mRNA upstream 9298 74792413 ~ 74831994 (+) False LOC110538397
XM_021625188.2 mRNA upstream 9299 74792419 ~ 74831993 (+) False LOC110538397
XM_021625190.2 mRNA upstream 9299 74792428 ~ 74831993 (+) False LOC110538397
XM_036938414.1 mRNA upstream 9299 74811457 ~ 74831993 (+) True LOC110538397
XM_021625191.2 mRNA upstream 56707 74776771 ~ 74784585 (+) True LOC110538398
XM_021625185.2 mRNA downstream 89245 74930862 ~ 74933801 (+) True LOC110538393
XM_021625183.2 mRNA downstream 99702 74941319 ~ 74942346 (+) True LOC110538391
XM_036938417.1 mRNA downstream 118420 74960037 ~ 75102995 (+) False LOC110538388
XM_036938418.1 mRNA downstream 118420 74960037 ~ 75102995 (+) False LOC110538388
XM_036938419.1 mRNA downstream 118420 74960037 ~ 75102995 (+) False LOC110538388
TU1261780 other upstream 994498 73846255 ~ 73846794 (+) True G1109786
TU1261764 other upstream 1006686 73833643 ~ 73834606 (+) True G1109778
TU1261395 other upstream 1455425 73384808 ~ 73385867 (+) True LOC110538462
TU1261422 other upstream 1535138 73305425 ~ 73306154 (+) True G1109505
TU1257805 other upstream 2823002 72017593 ~ 72018290 (+) True LOC110538241
TU1263295 other downstream 118649 74960266 ~ 75048356 (+) True G1111126
TU1264041 other downstream 577172 75418789 ~ 75423163 (+) True G1111805
TU1264215 other downstream 903522 75745139 ~ 75745620 (+) True G1111961
TU1264225 other downstream 909253 75750870 ~ 75753593 (+) True G1111970
TU1264251 other downstream 942733 75784350 ~ 75786987 (+) False LOC110538360

Expression Profile