RNA id: TU1263230



Basic Information


Item Value
RNA id TU1263230
length 230
lncRNA type intronic
GC content 0.53
exon number 1
gene id G1111062
representative True

Chromosome Information


Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 74880893 ~ 74881122 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTGAATACAGAGGCTGTCTGGAGAACGTCTGAATACATAGACTGGCTGGGGAGAACGTCTGAATACAGAGACTGGCTGGGGAGAACGTCTGAATACAGAGACTGGCTGGAGAACGTCTGAATACAGAGGCTGGATGGGGAGAACGTCTGATTACAGAGGCTTGCTGGGGAGAACGTCTGAATACAGAGGCTTGCTGGGGAGAACGTCTGAATACAGAGGCTGGCTGGGGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1263227 lncRNA upstream 10065 74870212 ~ 74870828 (+) True G1111059
TU1263224 lncRNA upstream 13901 74866421 ~ 74866992 (+) True G1111057
TU1263219 lncRNA upstream 21382 74859189 ~ 74859511 (+) True G1111053
TU1263212 lncRNA upstream 22671 74857978 ~ 74858222 (+) True G1111050
TU1263211 lncRNA upstream 23086 74857458 ~ 74857807 (+) True G1111049
TU1263231 lncRNA downstream 1465 74882587 ~ 74883074 (+) True G1111063
TU1263234 lncRNA downstream 6568 74887690 ~ 74887901 (+) True G1111066
TU1263238 lncRNA downstream 13006 74894128 ~ 74894598 (+) True G1111070
TU1263242 lncRNA downstream 16970 74898092 ~ 74898354 (+) True G1111074
TU1263244 lncRNA downstream 18452 74899574 ~ 74899799 (+) True G1111076
XM_021625189.2 mRNA upstream 48899 74792413 ~ 74831994 (+) False LOC110538397
XM_021625188.2 mRNA upstream 48900 74792419 ~ 74831993 (+) False LOC110538397
XM_021625190.2 mRNA upstream 48900 74792428 ~ 74831993 (+) False LOC110538397
XM_036938414.1 mRNA upstream 48900 74811457 ~ 74831993 (+) True LOC110538397
XM_021625191.2 mRNA upstream 96308 74776771 ~ 74784585 (+) True LOC110538398
XM_021625185.2 mRNA downstream 49740 74930862 ~ 74933801 (+) True LOC110538393
XM_021625183.2 mRNA downstream 60197 74941319 ~ 74942346 (+) True LOC110538391
XM_036938417.1 mRNA downstream 78915 74960037 ~ 75102995 (+) False LOC110538388
XM_036938418.1 mRNA downstream 78915 74960037 ~ 75102995 (+) False LOC110538388
XM_036938419.1 mRNA downstream 78915 74960037 ~ 75102995 (+) False LOC110538388
TU1261780 other upstream 1034099 73846255 ~ 73846794 (+) True G1109786
TU1261764 other upstream 1046287 73833643 ~ 73834606 (+) True G1109778
TU1261395 other upstream 1495026 73384808 ~ 73385867 (+) True LOC110538462
TU1261422 other upstream 1574739 73305425 ~ 73306154 (+) True G1109505
TU1257805 other upstream 2862603 72017593 ~ 72018290 (+) True LOC110538241
TU1263295 other downstream 79144 74960266 ~ 75048356 (+) True G1111126
TU1264041 other downstream 537667 75418789 ~ 75423163 (+) True G1111805
TU1264215 other downstream 864017 75745139 ~ 75745620 (+) True G1111961
TU1264225 other downstream 869748 75750870 ~ 75753593 (+) True G1111970
TU1264251 other downstream 903228 75784350 ~ 75786987 (+) False LOC110538360

Expression Profile