RNA id: TU1263391



Basic Information


Item Value
RNA id TU1263391
length 200
lncRNA type intronic
GC content 0.51
exon number 1
gene id G1111220
representative True

Chromosome Information


Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 75071638 ~ 75071837 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ACGACACCCAGTGCTTACTGTAAGTGCAGCTGTTGTGGCTGGATGTAGATGTCTTGGTAAAGCTAACAAACAGCAGGTATGGTATCTTGGTGCATAAACAAGACAAGGCCATCCACTGACCCTACCAGACATGCAGGGATGACAGATTGGCCGTCTCTTAAAAGCAGTGACACATGACCCACCCTGACTCCGACACCCCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1263387 lncRNA upstream 2682 75068665 ~ 75068956 (+) True G1111216
TU1263381 lncRNA upstream 9985 75061432 ~ 75061653 (+) True G1111210
TU1263380 lncRNA upstream 10718 75060699 ~ 75060920 (+) True G1111209
TU1263360 lncRNA upstream 26458 75035850 ~ 75045180 (+) True G1111189
TU1263251 lncRNA upstream 165128 74906201 ~ 74906510 (+) True G1111083
TU1263395 lncRNA downstream 5088 75076925 ~ 75077143 (+) True G1111224
TU1263292 lncRNA downstream 32003 75103840 ~ 75104377 (+) True G1111123
TU1263293 lncRNA downstream 32629 75104466 ~ 75104754 (+) True G1111124
TU1263411 lncRNA downstream 56510 75128347 ~ 75128589 (+) True G1111240
TU1263439 lncRNA downstream 98663 75170500 ~ 75170718 (+) True G1111267
XR_002475749.2 mRNA upstream 22931 75038342 ~ 75048707 (+) True LOC110538390
XM_021625183.2 mRNA upstream 129292 74941319 ~ 74942346 (+) True LOC110538391
XM_021625185.2 mRNA upstream 137837 74930862 ~ 74933801 (+) True LOC110538393
XM_021625190.2 mRNA upstream 239645 74792428 ~ 74831993 (+) False LOC110538397
XM_021625178.2 mRNA downstream 64424 75136261 ~ 75216446 (+) False LOC110538386
XM_021625174.2 mRNA downstream 91041 75162878 ~ 75216446 (+) False LOC110538386
XM_021625175.2 mRNA downstream 91041 75162878 ~ 75216446 (+) False LOC110538386
XM_021625176.2 mRNA downstream 91042 75162879 ~ 75216446 (+) False LOC110538386
XM_021625177.2 mRNA downstream 91042 75162879 ~ 75216446 (+) True LOC110538386
TU1263295 other upstream 23282 74960266 ~ 75048356 (+) True G1111126
TU1261780 other upstream 1224844 73846255 ~ 73846794 (+) True G1109786
TU1261764 other upstream 1237032 73833643 ~ 73834606 (+) True G1109778
TU1261395 other upstream 1685771 73384808 ~ 73385867 (+) True LOC110538462
TU1261422 other upstream 1765484 73305425 ~ 73306154 (+) True G1109505
TU1264041 other downstream 346952 75418789 ~ 75423163 (+) True G1111805
TU1264215 other downstream 673302 75745139 ~ 75745620 (+) True G1111961
TU1264225 other downstream 679033 75750870 ~ 75753593 (+) True G1111970
TU1264251 other downstream 712513 75784350 ~ 75786987 (+) False LOC110538360
TU1264248 other downstream 715699 75787536 ~ 75788291 (+) False LOC110538360

Expression Profile