RNA id: TU1263293



Basic Information


Item Value
RNA id TU1263293
length 264
lncRNA type antisense_over
GC content 0.34
exon number 2
gene id G1111124
representative True

Chromosome Information


Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 75104466 ~ 75104754 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CATGCATCTTTAATAAGTTATAGGAAGGCAGTACCTATTGTATAGAACAAGTTTCCACAAGTGAAAATAGAGGTAGCGATATTTAATCTAATCTTTACATTATGCTTTAAACTGATTACATGTGAGGACAAGTAGATGCTTCGAACAATACATAACAGACAAACATGGATGCAGCATATTGTACAATTAAATCCAGTTTGGCACACATACTATAACGCCCTTCTATTACAGTAGCTCTGAGCATTTTACACTTATCACAGAAGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1263292 lncRNA upstream 89 75103840 ~ 75104377 (+) True G1111123
TU1263395 lncRNA upstream 27323 75076925 ~ 75077143 (+) True G1111224
TU1263391 lncRNA upstream 32629 75071638 ~ 75071837 (+) True G1111220
TU1263387 lncRNA upstream 35510 75068665 ~ 75068956 (+) True G1111216
TU1263381 lncRNA upstream 42813 75061432 ~ 75061653 (+) True G1111210
TU1263411 lncRNA downstream 23593 75128347 ~ 75128589 (+) True G1111240
TU1263439 lncRNA downstream 65746 75170500 ~ 75170718 (+) True G1111267
TU1263447 lncRNA downstream 74818 75179572 ~ 75179771 (+) True G1111275
TU1263456 lncRNA downstream 84971 75189725 ~ 75189958 (+) True G1111284
TU1263459 lncRNA downstream 93549 75198303 ~ 75198576 (+) True G1111287
XM_036938417.1 mRNA upstream 1471 74960037 ~ 75102995 (+) False LOC110538388
XM_036938418.1 mRNA upstream 1471 74960037 ~ 75102995 (+) False LOC110538388
XM_036938419.1 mRNA upstream 1471 74960037 ~ 75102995 (+) False LOC110538388
XM_036938420.1 mRNA upstream 1471 74960037 ~ 75102995 (+) True LOC110538388
XR_002475749.2 mRNA upstream 55759 75038342 ~ 75048707 (+) True LOC110538390
XM_021625178.2 mRNA downstream 31507 75136261 ~ 75216446 (+) False LOC110538386
XM_021625174.2 mRNA downstream 58124 75162878 ~ 75216446 (+) False LOC110538386
XM_021625175.2 mRNA downstream 58124 75162878 ~ 75216446 (+) False LOC110538386
XM_021625176.2 mRNA downstream 58125 75162879 ~ 75216446 (+) False LOC110538386
XM_021625177.2 mRNA downstream 58125 75162879 ~ 75216446 (+) True LOC110538386
TU1263295 other upstream 56110 74960266 ~ 75048356 (+) True G1111126
TU1261780 other upstream 1257672 73846255 ~ 73846794 (+) True G1109786
TU1261764 other upstream 1269860 73833643 ~ 73834606 (+) True G1109778
TU1261395 other upstream 1718599 73384808 ~ 73385867 (+) True LOC110538462
TU1261422 other upstream 1798312 73305425 ~ 73306154 (+) True G1109505
TU1264041 other downstream 314035 75418789 ~ 75423163 (+) True G1111805
TU1264215 other downstream 640385 75745139 ~ 75745620 (+) True G1111961
TU1264225 other downstream 646116 75750870 ~ 75753593 (+) True G1111970
TU1264251 other downstream 679596 75784350 ~ 75786987 (+) False LOC110538360
TU1264248 other downstream 682782 75787536 ~ 75788291 (+) False LOC110538360

Expression Profile