RNA id: TU1263411


Basic Information

Item Value
RNA id TU1263411
length 207
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G1111240
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 75128347 ~ 75128589 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaacaacccttgaatgagtaggtgtgtcaacttttgactggtactgtatatatatagtggggcaaaaaagtatttagtcagccaccaattgtgcaagttctccctcttaaaaagatgagagaggcctgtaattttcatcataggtacacttcaaccatgacagacaaaataaggaaaaaaaatccagaaaatcacattgtaggattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1263293 lncRNA upstream 23593 75104466 ~ 75104754 (+) True G1111124
TU1263292 lncRNA upstream 23970 75103840 ~ 75104377 (+) True G1111123
TU1263395 lncRNA upstream 51204 75076925 ~ 75077143 (+) True G1111224
TU1263391 lncRNA upstream 56510 75071638 ~ 75071837 (+) True G1111220
TU1263387 lncRNA upstream 59391 75068665 ~ 75068956 (+) True G1111216
TU1263439 lncRNA downstream 41911 75170500 ~ 75170718 (+) True G1111267
TU1263447 lncRNA downstream 50983 75179572 ~ 75179771 (+) True G1111275
TU1263456 lncRNA downstream 61136 75189725 ~ 75189958 (+) True G1111284
TU1263459 lncRNA downstream 69714 75198303 ~ 75198576 (+) True G1111287
TU1263422 lncRNA downstream 151213 75279802 ~ 75281277 (+) True G1111250
XM_036938417.1 mRNA upstream 25352 74960037 ~ 75102995 (+) False LOC110538388
XM_036938418.1 mRNA upstream 25352 74960037 ~ 75102995 (+) False LOC110538388
XM_036938419.1 mRNA upstream 25352 74960037 ~ 75102995 (+) False LOC110538388
XM_036938420.1 mRNA upstream 25352 74960037 ~ 75102995 (+) True LOC110538388
XR_002475749.2 mRNA upstream 79640 75038342 ~ 75048707 (+) True LOC110538390
XM_021625178.2 mRNA downstream 7672 75136261 ~ 75216446 (+) False LOC110538386
XM_021625174.2 mRNA downstream 34289 75162878 ~ 75216446 (+) False LOC110538386
XM_021625175.2 mRNA downstream 34289 75162878 ~ 75216446 (+) False LOC110538386
XM_021625176.2 mRNA downstream 34290 75162879 ~ 75216446 (+) False LOC110538386
XM_021625177.2 mRNA downstream 34290 75162879 ~ 75216446 (+) True LOC110538386
TU1263295 other upstream 79991 74960266 ~ 75048356 (+) True G1111126
TU1261780 other upstream 1281553 73846255 ~ 73846794 (+) True G1109786
TU1261764 other upstream 1293741 73833643 ~ 73834606 (+) True G1109778
TU1261395 other upstream 1742480 73384808 ~ 73385867 (+) True LOC110538462
TU1261422 other upstream 1822193 73305425 ~ 73306154 (+) True G1109505
TU1264041 other downstream 290200 75418789 ~ 75423163 (+) True G1111805
TU1264215 other downstream 616550 75745139 ~ 75745620 (+) True G1111961
TU1264225 other downstream 622281 75750870 ~ 75753593 (+) True G1111970
TU1264251 other downstream 655761 75784350 ~ 75786987 (+) False LOC110538360
TU1264248 other downstream 658947 75787536 ~ 75788291 (+) False LOC110538360

Expression Profile