RNA id: TU1263485


Basic Information

Item Value
RNA id TU1263485
length 6323
lncRNA type antisense_over
GC content 0.45
exon number 4
gene id G1111312
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 75288131 ~ 75294663 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atttttttatcaagtTCATACAAAGAACACTTAGTAAGGTTTCCTCTAAAAACAGATGGTTAAAAAGCCAGACAATAAGTTTGACCTTCTTCCTCAAAAATTATTTTGTAATTAGTGCTGTAAAAACGGAAACAAtcttcatcatcattatcatcgtCGTCATCAATGATGACCTCTTTTAAAATGTAAGTAAACAGCTAGGGAATGAAAGGACCCTGTTGATGTTATGAGGGTTTCTTTATGAGACTGATTGATCTGCATAGAACTAAAGTGTTAAGCTTGGGTGGGAGGGGTTTTTAATTCCCCTCATATCAGTGTCCTCTTTCTTTGTGGAAGGAGCTCATTGGAACTCTCTAATCAACTGATCTGCTGCCCAAATGCAACATCCTGTAAACCTGTAGTGTAGTTATATTAATGCTCTATAACAGGAGTATGCTGCTATGTATTTCCGTCTTTTAACCTGAACATTTAACATTCCTAATTCAGGACATGCCTCAGGTTGTCCACTACTGGAGTGGGAGGATGCGAGAGAGGGATGTGGTTTGTGGCGTTTGGCTCTTTGCTCTCTCTGATGGAGTCAGTCCAGACCCTGGAGACATTTAAATGAAGTCAAACATCAGTGACAGCTGGCCTGGGTCTCCGTGGGGATGCGGTGGCAGAACAAAACAAATGCAGGGCACTAGGAGAGAGGGATGCCCAGATAAATGCTGAATTCATGGAGTACTTGCCCAGACCAAAGGGTCTTCTTTTGACAGTGCCTGCCTTCCTTATACAATGTAGCCACCAAATTAACATAAAATATGCTTTTCATTTGTCTTGCCTGTTCTTCTGGAATTGTATTTACTGTGTCAGTGTGTACTGTGCTGAATGCACGTGTGTTCGTGTGTACACATTTATTCACATGTAGGCCTACACATTCTTCTAGAcattaaatatacatttttagcTCCATTTCTCGTGGCCTTTAACTATGAATAAAGAATTGCATAATCAAAACCACATGTAAACAGAGAACATAAGAACACCTGCAACAACGAGGATTATTTTTAGATGTCAGGGCAGTATAATTAGCACAGGCCCGTCAGCTAAATTAATATAATTTCTGGTCAAAACATGCAATGTTCCAGCCCCTTAATTACCTTGTATCTCCATTCTATCTAGACAGCCTGGGCATATTAAGAGGTGTCCAAACCAATTTTCGGATTCATTTAAAAGCCATAGACCTTGAATATAAATAAAATTAGATGAcaatttaatttaaaacaatccaATTGTACATTTATAATTGGGCTATTTTATTGACCAAGTCTACAGGCATTGCAACGGTACTTGATCCTTGGTTAAGGACGTCAATTAAAATCTTCCCTATGGTTTCTTCCTTGTCTAAAGAGTTTACGCACATACTGGGCCCCCTCTTAAGGTTAAGATTAAAAAAGAGTACCAGTATTTGCCCTGCTTTACGGAGCGGAGTAGGGGGAAGGTGTGGTAAGAAGGGGGGACTTTTAGCTGATAGAACAAGGAGTAGGCCTCCCCTCTTTAGCCTCGCATGTTCACAGATAACTTCACATACTCCAGGGGTTTGGAACGCTTCTGCCAGCTAACAACCAAGAGAAACAGAATTAGCCAAATCGGAGATGTCTGAAAAAATTAATTTGGACACCGCAATCTGGGTGACCCAAACGCTGGTAGCTCTCCACTCAACGCAAAACAAGAGAAAGATGTGTTGTTCTTGTTTAAGTCTATAAAAAGCCCTTATATAAACCAAGTATTTAACCATTTTTAAAGCAGACAAGTGGTACAATATATATACACAAGTACATAGCAATCAAAGGTAGTCGACTACCAAAAGTATGGAACAACACATGATTTGCAGATATAAGCTGCACAGGAATCACAAATCTTCAATCGTCATCGTTAATGTCTTGCCAAAGCACTTGAATACAATGCATTTTTGACATGAATACACGAGTGTATGTACCATACATAGTATCCGAAAAAGCACAAGCTTCAAACACAGGACGTTTTCTGTGCGTGGCCAGTTTTGAATCTGAAAGCACTTCATCTCTCGTCAGTCAAACGCTACTTTTTTGAAAGAACTTCCAATCCGAATACAGTACAAAACAAATCATACACAATATATTGCTAAGGATGAAACCCAAGTATGTCTACCAGGTTGCATTCAGATAACCTGTTGTAGAATAGTTGCGTTTAGGAAGTTTTACAAAGAACAGTCATTCAGCTCTTTCAGGGTGCCGTATATACAGTGTAATCAGTAGAGATTGAGTATACACACTAAGCTGATGGTCCACAGTCTGACATTCCCACTGTGTGCGATCAGTTACGTGTACTCAATTTCTCCTGATAAGAATTGTTTTGGTCCAGCACCTACAACCACAGAATGGGCGACTGTGAGATATACATGGCTCCTCTGTCCTGCTGTGGTATATAATTTACATCATCCAGTGTTGAGAAACTGAGGCAAAACTTTGGGCCAGTAAGCCTTCGTCAGCTTTAATTCACTTTTGACTGTCCAGCATAGACTGAGGCAATCCAAAACCAGCGGGCTTACTGTGACAGTATTGGTGTAGGATTCATTGTACGGAGGCCCGCGGGAAAAAAGACTCTGGCATACCTGTGGGCCAAAAAGGCCCTTCACCGGGTGGAATCTCAGCCAATTACAGTGCTTCGTTCCACTATAGGAGGCAAGCCAAGGCGCTAGCCTGGCGACATCCTGGTGCCTCGCTAGCTGTCAGCTTGGCCCCAGGCTGTGTTTGTCCTTGAAGCCTCAGAGGCTCTCCCTCCTCATGGAGACTCCCTGGAGCCTGAAGGATCCATGTGTCACAACGTCAGCATCGTTCAGCTAGCATTAGCAACACTATCCTAGTGCCTGCAGCCTGTAGAGCTCAGATGGGGTTTCAGAGGTGTCCACTCTTGCAGGCCAGCCCTGATAACTGCTTGTAGGTTTGTGTTTCCTTTAGTATGGCCTTGCTGgaattgtgtctgtaaaataacATTTGAATCCGTCCAATAGTAAAAGGTCATGGAGAGCTAATCAAGCTTTTTTTCTGAGTGGATAGGATTCTCAGAGTTCTGATTCGCTAATGCAACTTCCTCTGCCGGAGAAgcgcaggaggagagagaagagagaattaaTAAAAGCTCAGTGGTCTGATTTCTGAGAAAATAGTCCTAAATATCTTTCAGAAGAGCCTGagattgcaacaacaacaaaaattctgGGTCTATGTAGCTCTGCTTCCACCTCAGCTCCCCACATTTAAAGGACTCCGGAAAGGTGCAGAGTCAGACTCCAGAGAGAGGGTTTGCAGATAGATGGGTACTTATTGCTTTGCAGACATAACATATTGCTTGTTCACAACCACCAATGCATCCTGAACGATAAAGGAGAGAGTCCATAGAATACTTTATATGGCTGGGCTGTTAAGCTAAGAATCATTgtgtgtaaccccccccccccccctcgtttaCAAATTGAAGTTGGAGAAAGCTAAATGGTGACCGTGCATGCTGCATACGGTAGCTATGAGTGCAGATGTGCATGATGCATATTTATACATGTACTGTGCATAACCCAACACTTCTCTATTTCTGATTTACTTTTATTCAACCATATCATAAAAACAACAACTCCAAGTGGGTCTTATGTAGATTACATAACAGCTTTAGAAATCCTGAAGTATGAACCGTGGACAGATAAATCAAATCCCCAATGAAATGTAACATAAGCATAAACCCAGAAACGTAATAGTCTGCACGTAGTTTAAATCAATTCAAATGTCTTATATTCCATATCATGCTGCTACagtgaaaccactttctgtctgTCCGTAACACAGAATGGCTCGACAATAGCAGCCGAATGAATCTCCAAATCATTTAACACTGTGAAAGCCCTGCTCCACTCCATGCATGcctagtgtgtgagagtgtgtgagggcCTGCCATGCTGGGGATTGAGTATCATTAGTTATGGCTGCACCCCCCATGAGGAGGCATGGTGTCCCCTGGCTGGGAACAGCTTGGAAGACCATGCAGGGGTTGGATGCTGGAGGCTCCCACCGTAAGTCAACCCCACTGGGAAAGGGAGAGCAGAGGAAAGGGGGTCTGGTGGAGCTCAGGAACAGGCTGGAAGCTGGTTGGTGGGGAGGAGCTAGCAGCAAATGGTGAATGACTCTAGTAAACACGACTGACTGGCTGCCATCCGTTGATACGGTTCCACCTGTCTGGAATACCCTGGGCGTAGGTATGCACTGCGGCGTAACCTGTTTACTTAAGATAATACATTAAGCTTGAGGCTTGGGCTAAATTGCATCAAATGTATGGTGAAGGACGGCGCTTGTGTGAACTTAGACGTATCAGGTTTCCATGCAAATATTGTACCTTGCGGTCAAGTGTAAAATGATAACGAGCCAAGAGGAGTTGCTTGCTCTCCTGTAGCTGGAAATAATCCTTGTGGTTGGGAAAGACTTACTGTAATGTCTATGTGTAGCCACTAGCTTCAACCCAGCTGCATTTACAGTGACTCATTATACATATAGATGAACCATACACCTGCATTCAACAAAATAATCATATTAAAGCCTATTTTAATATTACAATAATATATGCATGCATCACATGAATTGCTGCCAGTCTGGAAGACATACTTTTATAAAATACTCTGTGTATGAGTTTTCTTTCTTCCTGACGTTTGTGCATTCATGTTTGGATAAATTCTTCAACAGCAAGCCAAAGCtaagataaaataaaaaagcaaTGACCTTTACTTCACACCTACAACTTTCCACCCTTGCATTGCCTTTGGCACCATATTACCCGGGACAGACACGGCGGCCTGTCCTGCCCTCTAGCAGGCGCCTATATTGTCCCTTGCGATTTGCGTTGAAGCTTCACTAACATAGACCGTACCATTTAACACGACTGTGGTGACCTTGCTGATACCTGTGCTGTTTGCCCTTTCCGATGCATGCATCACCGGTTaagacaacaacaaacaacacatCGCTGAGAGACGTGGACGCTGACGATCCCCAGGGAGTCTCCAGACACAACCACTGTGTGAGATTCCCCAGCTTTGACGACCAGGGGGCCTAAAGCTTCAGGGCTCTTCTCTAGCAGGTGACGAACAGGAGGTGCTTGCCGCACCAAACCTCTGTCCGGCTTAGTTCCTCATCCCTTACGCTTCAGGATGAATAAACAAGCACCTCCTTTcccgctgtttctctctcttcctctccctctctctctctctctctcggtggtaCAGATTTGCCAGAATGGTATCTTACTCTGTTCTGGATGGAGAGTGATGGGAGCTGACAAGACAATGGCATTGTCACTGCTGTTGTTCAGGGTCCTGGGGGTGCTTTACCCATGTGTACCACTCTGACAGGCTGCAAAAAGTAGgagagtgtgtaagtgtgtgtgtgtgtgtggggtgggggggggggggggggggggagtagagtAGTTTGTAGAGTAGTGGTGCCAGGGGGAGCAAAGAGGAGATTGACCAAAACAAAACAGGGAGGACGCTGGGACAGAGAGGGAATTTAGGGGAACCAGGTCTAGAGAGAGCGAGTCACTTCATGTGATCATTACCTTCCGTTTTGGGTGTTACATTATCAATAACGAAGAAAACCTGCAATTAAAATAGCAAAAGAAGATTGCTTGTTCCTGTTCGTCCCCCCAGCCATCAACACGACATTGATTCGTACAAAAAGCTCTCGCCCCCTGGCCTTACTCCCAGTCCTATAGACTCTTTTCTTGCCCTCCTGCTCTCCAAACATTCATGCTCAGACTGTGACCTCTGTCTTGCTGTTGGTGGGCAGCCCCTTGTTTTTGGGGTGCATGTGGGGCGACTGTCCATAGCCCAGAGGCTGGGAGAAGAGTTCCGGGAGTGTCTCAATGCTGAACTTCCGCTTGTTGGAGTAGGCCTGCCGGCGGCTGGTGGGCTGTTGATGTAACTGCTGTTGATGTTGCGGATGCTGCTGATGCTGCTGATGCTGCGGATGCTGCGGATGCTGCTGCAGTGCCTGCCCGATGTGGGAGGCCGTTGGATGCTGGACATGGCCCTTACTGGGGTCCCAGACTTTGAAGGCCGAGCTGGAGGTAAGCGGGTGGGTGTTAGTCTTGGAGATCTTGGGCTTGGGGAGCTGGGCGGCGGTGATGGTTATGGCCAGTGGGGCGTGGATGTCTGGAGGGGGCAGGAAGGGCTTGTCCTTGTGAAAGGCGATGGGCTGGAAGGTGGGGGGCGAGGAGTGATGGCGGGAGTAGTCCACCATGGGGTAGCCCTTGTAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1263480 lncRNA upstream 3672 75284139 ~ 75284459 (+) True G1111307
TU1263479 lncRNA upstream 4026 75283884 ~ 75284105 (+) True G1111306
TU1263422 lncRNA upstream 6854 75279802 ~ 75281277 (+) True G1111250
TU1263459 lncRNA upstream 89555 75198303 ~ 75198576 (+) True G1111287
TU1263456 lncRNA upstream 98173 75189725 ~ 75189958 (+) True G1111284
TU1264031 lncRNA downstream 98835 75393498 ~ 75414066 (+) True G1111798
TU1264118 lncRNA downstream 240077 75534740 ~ 75536458 (+) True G1111871
TU1264120 lncRNA downstream 243622 75538285 ~ 75538518 (+) True G1111872
TU1264122 lncRNA downstream 244945 75539608 ~ 75539812 (+) True G1111874
TU1264140 lncRNA downstream 268753 75563416 ~ 75563759 (+) True G1111890
XM_036938425.1 mRNA upstream 8589 75256250 ~ 75279542 (+) False LOC110538383
XM_021625157.2 mRNA downstream 149325 75443988 ~ 75463480 (+) False LOC110538378
XM_036938434.1 mRNA downstream 149326 75443989 ~ 75463480 (+) False LOC110538378
XM_021625158.2 mRNA downstream 149440 75444103 ~ 75463480 (+) False LOC110538378
XM_036938435.1 mRNA downstream 149448 75444111 ~ 75463480 (+) True LOC110538378
XM_036938445.1 mRNA downstream 216336 75510999 ~ 75517780 (+) True LOC110538377
TU1263295 other upstream 239775 74960266 ~ 75048356 (+) True G1111126
TU1261780 other upstream 1441337 73846255 ~ 73846794 (+) True G1109786
TU1261764 other upstream 1453525 73833643 ~ 73834606 (+) True G1109778
TU1261395 other upstream 1902264 73384808 ~ 73385867 (+) True LOC110538462
TU1261422 other upstream 1981977 73305425 ~ 73306154 (+) True G1109505
TU1264041 other downstream 124126 75418789 ~ 75423163 (+) True G1111805
TU1264215 other downstream 450476 75745139 ~ 75745620 (+) True G1111961
TU1264225 other downstream 456207 75750870 ~ 75753593 (+) True G1111970
TU1264251 other downstream 489687 75784350 ~ 75786987 (+) False LOC110538360
TU1264248 other downstream 492873 75787536 ~ 75788291 (+) False LOC110538360

Expression Profile