RNA id: TU1267511


Basic Information

Item Value
RNA id TU1267511
length 227
lncRNA type intronic
GC content 0.52
exon number 1
gene id G1114729
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 77717179 ~ 77717405 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCCAATTCTGCTGCCTAAAGGATAGACAGCAAAACACAGCCTGCTCCACCCTCTCCAATTCTGCTGCCGAAAGGATAGACAGCAAAACACAGCCTGCTCCACCCTCTCCAAATCTGCTGCCGAAAGGGTAGACAGCAAAACACAGCCTGCTCCACCCTCTCCAATTCTGCTGCCTAAAGGATAGACAGCAAAACACAGCCTGCTCCACCCTCTCCAATTCTGCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1267503 lncRNA downstream 2818 77714091 ~ 77714361 (-) True G1114722
TU1267499 lncRNA downstream 14299 77702590 ~ 77702880 (-) True G1114718
TU1267395 lncRNA downstream 16503 77698896 ~ 77700676 (-) True G1114630
TU1267491 lncRNA downstream 27637 77689342 ~ 77689542 (-) True G1114711
TU1267490 lncRNA downstream 28231 77688647 ~ 77688948 (-) True G1114710
TU1267512 lncRNA upstream 320 77717725 ~ 77718306 (-) True G1114730
TU1267529 lncRNA upstream 34858 77752263 ~ 77752618 (-) True G1114747
TU1267544 lncRNA upstream 56819 77774224 ~ 77819515 (-) True G1114762
TU1267573 lncRNA upstream 112588 77829993 ~ 77830288 (-) True G1114791
TU1267575 lncRNA upstream 114532 77831937 ~ 77832588 (-) True G1114793
XM_036938572.1 mRNA downstream 67439 77633767 ~ 77649740 (-) True LOC110538478
XM_036938571.1 mRNA downstream 67441 77633767 ~ 77649738 (-) False LOC110538478
XM_036938574.1 mRNA downstream 67441 77633767 ~ 77649738 (-) False LOC110538478
XM_036938573.1 mRNA downstream 67444 77633767 ~ 77649735 (-) False LOC110538478
XM_021625327.2 mRNA downstream 104353 77610820 ~ 77612826 (-) False LOC110538477
XM_021625330.2 mRNA upstream 2305 77719710 ~ 77727698 (-) True LOC110538481
XM_021625334.2 mRNA upstream 109134 77826539 ~ 77829451 (-) True LOC110538484
XM_021625338.2 mRNA upstream 182116 77899521 ~ 77904255 (-) True LOC110538489
XM_036938584.1 mRNA upstream 249457 77966862 ~ 77984741 (-) False LOC110538491
XM_021625342.2 mRNA upstream 249644 77967049 ~ 77968425 (-) False LOC110538491
TU1267504 other downstream 7307 77704507 ~ 77709872 (-) True LOC110539174
TU1267495 other downstream 21904 77694495 ~ 77695275 (-) True G1114714
TU1267444 other downstream 104379 77610845 ~ 77612800 (-) True LOC110538477
TU1267365 other downstream 234667 77482111 ~ 77482512 (-) False G1114604
TU1265712 other downstream 881896 76828782 ~ 76835283 (-) True LOC110538302
TU1267592 other upstream 141457 77858862 ~ 77862506 (-) False G1114809
TU1267593 other upstream 141457 77858862 ~ 77862506 (-) True G1114809
TU1267664 other upstream 249416 77966821 ~ 77968422 (-) False LOC110538491
TU1267665 other upstream 249416 77966821 ~ 77983230 (-) False LOC110538491
TU1267663 other upstream 264273 77981678 ~ 77983230 (-) True LOC110538491

Expression Profile