RNA id: TU1267575



Basic Information


Item Value
RNA id TU1267575
length 652
lncRNA type antisense_over
GC content 0.44
exon number 1
gene id G1114793
representative True

Chromosome Information


Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 77831937 ~ 77832588 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ACTAATCTTTATCCTAACCCTCCGTGTAATCCTCGGGCTCCGAGAATTTCACACCTACCACCTCCGATACTTCGCCCTCATTCACTTTCATTTATCCTGTCTTCGATCCAGTGTACAGATcacactttctaccattcttcaaCAAACCATCTCCCTTTCCCTCCATTTTTGACCAATTCAAGCTCACCTTCCTCTATTTTTCCTTCCATTCGTCCTCCGTAATCCAAGTATATATCTCCTGATACATCTAGGACGCCATTCCCCGCTCGCCCCAGCCCTCTGCATCCAGATGCGACACACACTTCAAGTTTGATCACCCCAAACATTTCCCTCACCAAAAAATAATGTTAACTCCTTATCGGTCATAACACTTTCAAAACTCGCAGAGATCTATAGTATTGCAGCGCGTAAGGCACCTAATGTGGTGCATAATTTGACTAGAAAGCTAGCTAGCAGCACAACAACCTCCGTTCGCTCCGTTTACAACATAATAGCACGCTATATTTGTTTGAGGTCAGAATCCATTTACCCATGTGATGGGCTACATTTCAAACATTGTTTTCCACATAATAAATGCGAATAAACTGGAACACTGCCAGacagttggctaacgttagctaatggtATGGTCTCTGCTAACCGAACATGCTGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1267573 lncRNA downstream 1649 77829993 ~ 77830288 (-) True G1114791
TU1267544 lncRNA downstream 12422 77774224 ~ 77819515 (-) True G1114762
TU1267529 lncRNA downstream 79319 77752263 ~ 77752618 (-) True G1114747
TU1267512 lncRNA downstream 113631 77717725 ~ 77718306 (-) True G1114730
TU1267511 lncRNA downstream 114532 77717179 ~ 77717405 (-) True G1114729
TU1267576 lncRNA upstream 573 77833161 ~ 77833542 (-) True G1114794
TU1267577 lncRNA upstream 2893 77835481 ~ 77836436 (-) True G1114795
TU1267578 lncRNA upstream 3905 77836493 ~ 77836799 (-) True G1114796
TU1267579 lncRNA upstream 5376 77837964 ~ 77838352 (-) True G1114797
TU1267584 lncRNA upstream 12857 77845445 ~ 77848986 (-) True G1114801
XM_021625334.2 mRNA downstream 2486 77826539 ~ 77829451 (-) True LOC110538484
XM_021625330.2 mRNA downstream 104239 77719710 ~ 77727698 (-) True LOC110538481
XM_036939529.1 mRNA downstream 112003 77704482 ~ 77719934 (-) False LOC110539174
XM_036938572.1 mRNA downstream 182197 77633767 ~ 77649740 (-) True LOC110538478
XM_036938574.1 mRNA downstream 182199 77633767 ~ 77649738 (-) False LOC110538478
XM_021625338.2 mRNA upstream 66933 77899521 ~ 77904255 (-) True LOC110538489
XM_036938584.1 mRNA upstream 134274 77966862 ~ 77984741 (-) False LOC110538491
XM_021625342.2 mRNA upstream 134461 77967049 ~ 77968425 (-) False LOC110538491
XM_021625343.2 mRNA upstream 148802 77981390 ~ 77984734 (-) False LOC110538491
XM_021625346.2 mRNA upstream 187237 78019825 ~ 78022637 (-) False LOC110538494
TU1267504 other downstream 122065 77704507 ~ 77709872 (-) True LOC110539174
TU1267495 other downstream 136662 77694495 ~ 77695275 (-) True G1114714
TU1267444 other downstream 219137 77610845 ~ 77612800 (-) True LOC110538477
TU1267365 other downstream 349425 77482111 ~ 77482512 (-) False G1114604
TU1265712 other downstream 996654 76828782 ~ 76835283 (-) True LOC110538302
TU1267592 other upstream 26274 77858862 ~ 77862506 (-) False G1114809
TU1267593 other upstream 26274 77858862 ~ 77862506 (-) True G1114809
TU1267664 other upstream 134233 77966821 ~ 77968422 (-) False LOC110538491
TU1267665 other upstream 134233 77966821 ~ 77983230 (-) False LOC110538491
TU1267663 other upstream 149090 77981678 ~ 77983230 (-) True LOC110538491

Expression Profile