RNA id: TCONS_00041140


Basic Information

Item Value
RNA id TCONS_00041140
length 6911
RNA type mRNA
GC content 0.36
exon number 3
gene id XLOC_020904
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 9827288 ~ 9861531 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAGATTCAAGCAACTCTGAGAACGTTTGAACTCTGAGCTGAGTTATTCTGAGTTCAGCGCGTGCACCATCACTTAAAAGATTGAGatCAACAGAAAGAGAACAAAGAGAGTCAAGAATTGAGTGAAGCGGGGGAGAAAGAATCATGCCAAAGCTGAGAAACTCACAGACTAAAAGTCCTTTACCTAAAGAAAAATCCCCAAATTCTTCCAACTGCCCTCAACGTCGTGAAACACATCAGAAAGTTCATCATGTAAAAAAGCGGATCACATGTGAACAGTGCAAGAAGAGTTTCACACAGAAAAAACAGTTTGACGAACACTTGAAAACACACGCTGCAGAGAAGCTCTACTCATGTGAtcagtgtgaaaagagtttcTCACGAAAGATTGACCTTCACCAACACTTACAAGTCCACAGCGATGAAAGGTTTTTCCCATGTGACCAGTGTGACAAGAGTTTTAAACAGAAAGGAAAGCTACAGGAACACATGAAAGTCCACAGAGATGAGAGGCCGCACTCATGTGACCAGTGCGGGAAAAGTTTCAAAATGGTAGGAAACTTAAACATGCACATGAAAATACACAGTGGAGAGAGGCCGTACTCATGTGATCAGTGCGGAAAGAGTTTTCCACTGAAAGGCACTCTTACGAAACACATGAACACTCACAAGGAAGAGAAGTCTTTCTCGTGTGACCAGTGCGGGaagtgttttaaagacaaaagttatttacagaaGCACATGAtaatccacaccggagagaagccgtactCGTGTGATCTGTGCGGGATGTGTTTTTCGATGAAATCAAAGCTTCGCATCCATATGAGGGTCCACACGGAAGAGAAGCCTTTCTCGTGtgatcagtgtgggaagagttttaaagCAAAGTCGTACTTACAGAAACACGTTAAAATACATTCGACAGAGAAGCCGCACTCATgcgatcagtgtggaaagacATTTTTGCTAAAAGCAAACCTTCAGCTACACTTGAAACTCCACAGTGAAGAGAAGCCTTTCTCATGTAAacagtgcgggaagagtttcaaaTTGGGAATGTACTTACAGGAGCACATGAAAGTCCACAGTGAAGTGAGACCGTATGTGTGTGATCAGTGTGAGAAGAGCTACAAGACGAAATCCAAGTTGAACATTCATCTGCGCATGCATGCTGAAAAAAAACCCTTCAGCTGTGATCAGTGTGGTAAAGAGTTTCTTTTGATTGAATACCTCAAGCAACATATGACGGTTCATAGCAAGGTGACTCCTCATAAGTGTCCAACATGTGGAAAATGCTTCAGGCTGCTGGATAACTTCAAAAGACACCAGGAAAGACACACCGGCGTAAAGAATCATATGTGCTTTGATTGCGGGAAGACCTTTTATAAAAGCAGTGAGCTGATTAAGCACCAGAGAGTTCACACTGGGGAAAAACCTTTTAAATGTTcgcactgcgacaagagattcagtcatACGGGAAATCTGCGAAATCACGAgagggtccacactggagagaggccgcaCACATGTGATCAGTGCGGGAAAAGCTTCCAACAAAAACGCATCCTTAACGATCACATGAATATCCACACTGGAGCGACGCCGTACTCGTGTGATCAGTGCGACAAGAGTTTCTCCCATTTAACTGCTTTATATTCGCACCGGCAGATTCATTCTAAAGAAACGTTTAACTGTGAACATTGCAGCAAAACGTGCCCCTCTGCAGGGTTGCTGAAGAAGCACATGAAGGTTCACACATCGGAGAAGCCTTTTGCGTGTACTGTTTGTGAAAAGCGATTTAAATCTAAAGCGGGTTTCGAAGATCACCTGAAAATTCACGCTGGAGTAAAATCGTATGCGTGCATCAAGTGTGAGAGAATTTTTCGTAAAATGAGCCATTTGAGACGGCATCAACtagttcacactggagaaaagccgtaTCTCTGCGTTCCTTGTGGCAGGAAATTCACCCAATCGGGTTCTCTGCGAACTCATGCAAAAATTTGTCCAAAGTCAAAATCTGTTGCTTAGCAAGTCATCTTCAGTGAAACTCCTCCAACAACAGTTCACCCCTATTGAAGCTCCTCTCCATCAGTTGACCCTTAGTGAATCTCCTCCCACAAGAGTACAACAATGAATGCTGAAAAATAAGTGTAATTgcgaaaaataataaaaaataataattgcgaAATAAGTGACAAAAACCCTTCTCCTCATTCAGTCAGTTACCTTTTCTAAGAATctatacaagaaaaaaaagaaacaaatatcatGTTGTTGAACTGAACAGAGGTTTTAATCATCTCTTCTAAAGTCATACACGAGCTAAATTTACTTTATtggatttgttttgttgtgcctTGTATTTTTTCCATCAGTAaagaggatttttaaaaaatgttttcaagtTTGCCTTATTTGACATTAGTTGACCAAGTGATCAATGACTACATCTGTTACTCATCCTTACTTTATTAACAACTTACTTTGTTAAATTTTATAATATGGTGATTCAATATTATAAAGGGGAAAAAAACGACTTTGTTATTGTTTGTTGACTTTTTACATtctcttattctttttttttttttttaattgttttaatattttttgattgGCCGTCCACCTTTCAGGCCTTGTAAACTGTTTAATGATTTTTAGATGTATTTTAACCCTGTAAGTATCTACTTTTTTGACTTTGTGTTTTAAAGACATAGCTTATTTTCTAATAAGTAATCGTTCATTGTAGTCCAGGCCCCATAGCCAATggggggttcaggtggtttgaaagacccacccctcccTGACAAAGGTTCAGAATTTGCCCCATACATGAGCTcttttgtcctattttgactgctataccATCATCAATTGTGGAAAACTCACCGAAAGCATCAAGACCACACAGAATCTGACGTAAATAAAGTCAACTTTCACTATTGACCTACTGTTTTGTTAaagaagaaaacattttacatgtaACTTTTATTAAGTCTTGGACCATATTCTTGAAtgaaaacataattaataaaaagGTACACAGCACTAAAAGTTGCCcatattaaagttattttaataccaattaggctattgttgttatccgaGAATTTTCTAATCTAGAAAAcattgtgaagctctacattattaatattgcgttttaaaagttttttattcaaatggtcaAGTTCTGATTGAGGAAagctgaatgtgctggccagtttgttatttgccttacAAATGACTTTTTTCCTGAAATAAAGGCCTATATGATATAattagtattttacattttttcgtGGTTCTTGATTGTAaatctttataaaatatttttggttttgatgaccatccaacaagttaatccagctaaaaatagtgcttaaaatgttactaaatgGAGCATATAAACCTCATAATTACATACAAAATAAGCCGAATAACTGAAAAAATAATCTACTTTTTTGAGAAAGAACCACTCCTTTCACCACttagtgtgtgtaaatatatagttcactccaaaatgaaaattctttcaGCATTTACCCCTCCTTatgtcattaaattacacatttgttCCTctttagaacacacacacacacacacacacacacacacacacatatatatatatatatatatatatatatatatatatatatatatatatatatatacactcacacacacacatcccctaacaaatgcaatatatatatatatatatatatatatatatatatatatatatatatatataaaatgcatttgTCTCAGACGCTTAACCTGAAACACAAAGTATACTTGGCTTGATTTTacaacctttttatttttttataataaaataataattgtataatacaaCTTAGAATACAGTAAAAAAGAATAGTTATTTTACACAATAATCACATTAGATACACAGGATAAAGAGCAAAAGAAACGTACAATAaggtataaataaaaataataatcaaaagaaaTCATGTAGCATAAAAGATCTTAACATATTTGCCCATGAAAGaagcacatttattattatcaattaatcTGAATGATTTTAATTTGTTCTATTTCACTCATGAAGTCTATACAAATTGATTTTTTAAGGAACCTCTGTAAAAGTAAAATTTCCAGCAAGTATAAGAAAGTTCACAATAtattcaaaataacaaataaagtcCTTAAGGAGCAAATTACAATTTATATTTTCTTCAGCAGGGTTTAAAATGGTTAAGTTCTGCATTATCATCATTCTGTAAAGCGCTAGGTGTCCGTGCTGGGGACACCGAGCTACAAGCAACAAAGTAGCTCTGTTTAATTCATGGAGAGATTAATGACTGTGTACGTGGTTGCTGTTTTTTTAGGAATGATATTACTGAATGCTAGGCATGGTGCGAACTCTTGGATCCAGAAGCCTCTTCGCGTAACGTCACTCTTAACTGCTGACTTTTagttcaataaactcctaatttgctgcttaattaaaagtttttaagGTCATTTTTTGGTAAGATTAGGGATGTACAAAATAGCATGTATTATGCATGATTGTATAACTACAATAAATTGTACATTATAGATTGTATagctactaataaacagccaacatTTGAATAATTGACAGGTAATAAGTCATTAGTTAGTAGTGAGACTTAGcaattaaactaaagtgttaccatttttatttcattttagacCTAAAAGAAGAAAACAAGGAGGATGGTGAATTACGTGGAAAGAATGAGAAacacaaatctttaaaaaacTCTACAAGACGATCGCTGAAaagagcttaaaaaaaaaactctcacctGTTCTTTGTGCGGCGAAGACCTTCAAATATAAACATAGTCTTCCAATTTATATGAGAGGTCATaatggagagaaaccgttcacatgccAACAATGCGGGCATAGTTTCACACAAAGGCTGGGCCTTAGAGGCCACATGCTGATCCACTCCGGAGAGAAGCCGTATTCATGTgatcaatgtgggaagagttacaGATAcgcaaaaagtcttaaaatactCCTCCTTTGTCATTCTGGAGCGAGACCGTATAACTGTGTAATATCAGTGTAATAAAGCATTTACCAGTGTAGATTCCTTAAGGACCCACTTGAAAATTCATAACAAGGAGAAGCCTTATGTTTGTTCGTTGTGTGGACGGAGTTTTTGTCAGTTTGGTGCTTTTAGTACGCACCTGAAAAGACACCGTGGTGTGAAGGATTACTTGTGCTTTGATTGTGGGAAATCTTTTATTAGAGACGCCGAACTGAAACAGCAGCAGagagttcacaccggagagaaaccttttaagtgttcacactgcgacagaGGCTTCAGTCAGCCAAGACATATGAAAGTACAtgagaggatccacactggagaaaaaccacaCACGTGTCTACTGCAGAAAGTTATTCGCTCAAGACCATTTCACTGCGATCAGTGcggaaaatctttttttaagggCAGACAGCCTGAAGAAGCACCTGAAAGTTCATACAAAAGAGAAGCCTTATGTTTGTTCTACATGTGGAAAGTGTTTCAGTGAGATGAGCACTTTAAAACTACACCAGAAAAGACACAATGGTGTGAAGAATCAAACGTGCGTTGATTGCGGAAAGACCTTTGTTACGAAAGCTGAACTGAAGCTGCACCagagaactcacactggacaaaaaccttacaagtgttcacactgcgacaggGTGTTTAAGTGGttagtgtctttaaaaatacatGAGAGGATCCACACTGGTGAAGTGCCATATCACTGTGCTCAGTGTGGGAGAGGATTTGGTAAATTAGCTTATCTGcgcaatcataaaaataaatgtgtaattaaaGAACCATCATTTAAAGTGTGATTCAACATATATTGGATTGTAGGAGCACAAGAGCTCTACAATGAAGACTGGTTATATTGAATGTATACATTTACATTGGAAAGTATGAGggaagcttttttttaaaaagcgaaagtgaaagtaaaacttTGGCTGTGCTGTATCATCAATTGCCTCAACAATTCTCACTGTGAATGTGGaaagtgtgtttctgtgtgtaaacaacacaacgaaaataaaaatgaaaaacagcagGCTGGtaggaaagtgaaagtgaaagtaaagctATTACCTCACAAAACTGAACATTAAAGCCATATTGCTTTACATGCACCACAAATAAAGTAGGAAACCATATCTggaaatttatatttttgtaccTTATCGATGTAATCACTTTTGGTTTTGTatgcattaatgtattaattgAGTTATATTAATATAGTTTAACATTGAGTAGTTTTTGATGCAATGGTATATAACGATCATATACGTAATCCATATTAAGAGTGATTCCTTCCAAATGAACAATgtctcattagttttattttcagatatcattttaattcattatatcaTTATAATGATTTTGTGTTGTTTAACTTGTTTCATTTAAATATGATGTTGATCATTGTATTTATCATAAatcttttgtttaaaataagttgTGTACATATTTTTCTAATTAATATTTGGGAGATTTTGGTTGTAAAGTATATTTTTACCTTGCGTTGATGACGTCACTAGAGTCTCACAGTCTGGTAAGTTGTTATATATGACAAAACACTGTTATCTTGAAATGACTGTGTTTTGCTGACATTAAGAAGAATGCACAATGTTTGATGTTTAAATTACATACTGTGTGCAATAGGGTGAGATATTGCATCGCAGCGCCATGCGTTTTAGAATCAAAGGGGTGTGCATTTTGCATTTTCTATCAAGGGGGTGCGCGACTATTTTTTAGAATTTTAACATGCATGGTGCTGCATCGTCGCTGGGCGCAGCATCCAGTGTGTGACCCCTCTCTTAACAATGTCACTACTGGGACTGTattgctg

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-410 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated.

Ensembl:

ensembl_id ENSDART00000193573

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042341 lncRNA downstream 53245 9752170 ~ 9774043 (-) True XLOC_020902
TCONS_00042340 lncRNA downstream 512116 9278778 ~ 9315172 (-) True XLOC_020897
TCONS_00042339 lncRNA downstream 521486 9276356 ~ 9305802 (-) True XLOC_020896
TCONS_00042338 lncRNA downstream 637912 9187673 ~ 9189376 (-) True XLOC_020895
TCONS_00041119 lncRNA downstream 875604 8939933 ~ 8951684 (-) True XLOC_020893
TCONS_00042342 lncRNA upstream 239757 10078760 ~ 10079624 (-) True XLOC_020914
TCONS_00041171 lncRNA upstream 314669 10153672 ~ 10156708 (-) False XLOC_020918
TCONS_00042343 lncRNA upstream 314669 10153672 ~ 10158106 (-) False XLOC_020918
TCONS_00042344 lncRNA upstream 377789 10216792 ~ 10222529 (-) True XLOC_020919
TCONS_00041176 lncRNA upstream 522727 10361730 ~ 10368325 (-) False XLOC_020921
TCONS_00041132 mRNA downstream 91238 9635294 ~ 9736050 (-) False XLOC_020900
TCONS_00041138 mRNA downstream 99080 9725815 ~ 9728208 (-) True XLOC_020900
TCONS_00041131 mRNA downstream 102892 9632831 ~ 9724396 (-) False XLOC_020900
TCONS_00041134 mRNA downstream 102892 9646524 ~ 9724396 (-) False XLOC_020900
TCONS_00041136 mRNA downstream 112695 9708244 ~ 9714593 (-) False XLOC_020900
TCONS_00041144 mRNA upstream 47900 9886903 ~ 9889413 (-) False XLOC_020905
TCONS_00041145 mRNA upstream 49204 9888207 ~ 9890386 (-) True XLOC_020905
TCONS_00041146 mRNA upstream 54108 9893111 ~ 9896180 (-) True XLOC_020906
TCONS_00041147 mRNA upstream 59025 9898028 ~ 9900378 (-) False XLOC_020907
TCONS_00041148 mRNA upstream 60097 9899100 ~ 9901788 (-) True XLOC_020907
TCONS_00041139 other downstream 819 9824521 ~ 9826469 (-) True XLOC_020903
TCONS_00041137 other downstream 112957 9714214 ~ 9714331 (-) True XLOC_020901
TCONS_00041096 other downstream 1318111 8507547 ~ 8509177 (-) True XLOC_020880
TCONS_00041090 other downstream 1481088 8346075 ~ 8346200 (-) True XLOC_020873
TCONS_00041072 other downstream 2209297 7614672 ~ 7617991 (-) False XLOC_020858
TCONS_00041160 other upstream 237575 10076578 ~ 10079669 (-) False XLOC_020914
TCONS_00041173 other upstream 317399 10156402 ~ 10158106 (-) True XLOC_020918
TCONS_00041196 other upstream 828855 10667858 ~ 10667974 (-) True XLOC_020936
TCONS_00041199 other upstream 924930 10763933 ~ 10764047 (-) True XLOC_020940
TCONS_00041246 other upstream 2745836 12584839 ~ 12584954 (-) True XLOC_020969

Expression Profile

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