RNA id: TCONS_00041146


Basic Information

Item Value
RNA id TCONS_00041146
length 880
RNA type mRNA
GC content 0.40
exon number 3
gene id XLOC_020906
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 9893111 ~ 9896180 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGAACTCTtcggggaaaaataaaaaaagcaaatcaCAGGGTAACGTTGGGTCTTCAAGGCTGAGttCTTTAACTGTGAAGCTTCACCAGTAAATGCTGAAACATTCCCATCAACCAAGAAGTGAAGCAAAGTTTGTGAGAGAACAGTGAGAACATGAGTGATTCAGGAGTCTGCACAATAAAACAGGAAGATGCTGAAGAACAAATAGACTTGTTAAATGAGAACAAGGAGATTGAAGATCTGATTAAAAGGGGAGAGAAACATCACATCAAAACAGAAGAAAACCTTTACAGTATCTCAACGATAAGAAAAGACAATCCATGTTTCACATGCCTTCAGTGTAAAAACACTTTCTCATGCGAGGAAAGTCTAAATCTTCACATGAAGATTCATAGAGAGGTGAAGCCACACACCTCTGATCAATGTGATGAGATTTTCACCGTAAAAGTTACAAATAACGTAAATGTCCACGCTGAGGAAACGGTGTACAATTGTGATCAGTGTGACAGGACTTTCACAGATAAGAGAAATTTAGCCGCACACATGAAATTTCACAGCGGAGAGAAGCCCTTCATGTGTGATCTATGTGGGAGGAGTTTTCTTTatgcaaatacattaaaaaaacaccgAAATTTACACAGCGCTGTGAAGAATCACGTCTGCTCCAAGTGTGGCAAGAGCTTTTTCACATTCAGTCAATTAAAAATCCACCACACAGCTCACGCTACAGAAAAACCTTTCAAATGTTCACACTGTGGCAAGGCGTTCAAATCATTACAGTGTCAACGAATACATGAGATGATCCACAGCGGAGAAAAGCCACACAAGTGCGATCAGTGCGAGAAGACTTTCAGACAGAGGAAAAGTTTAAACATCCAC

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-051113-232 Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDART00000138343

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042341 lncRNA downstream 119068 9752170 ~ 9774043 (-) True XLOC_020902
TCONS_00042340 lncRNA downstream 577939 9278778 ~ 9315172 (-) True XLOC_020897
TCONS_00042339 lncRNA downstream 587309 9276356 ~ 9305802 (-) True XLOC_020896
TCONS_00042338 lncRNA downstream 703735 9187673 ~ 9189376 (-) True XLOC_020895
TCONS_00041119 lncRNA downstream 941427 8939933 ~ 8951684 (-) True XLOC_020893
TCONS_00042342 lncRNA upstream 182580 10078760 ~ 10079624 (-) True XLOC_020914
TCONS_00041171 lncRNA upstream 257492 10153672 ~ 10156708 (-) False XLOC_020918
TCONS_00042343 lncRNA upstream 257492 10153672 ~ 10158106 (-) False XLOC_020918
TCONS_00042344 lncRNA upstream 320612 10216792 ~ 10222529 (-) True XLOC_020919
TCONS_00041176 lncRNA upstream 465550 10361730 ~ 10368325 (-) False XLOC_020921
TCONS_00041145 mRNA downstream 2725 9888207 ~ 9890386 (-) True XLOC_020905
TCONS_00041144 mRNA downstream 3698 9886903 ~ 9889413 (-) False XLOC_020905
TCONS_00041142 mRNA downstream 31580 9827288 ~ 9861531 (-) False XLOC_020904
TCONS_00041141 mRNA downstream 32319 9827288 ~ 9860792 (-) False XLOC_020904
TCONS_00041140 mRNA downstream 54108 9827288 ~ 9839003 (-) False XLOC_020904
TCONS_00041147 mRNA upstream 1848 9898028 ~ 9900378 (-) False XLOC_020907
TCONS_00041148 mRNA upstream 2920 9899100 ~ 9901788 (-) True XLOC_020907
TCONS_00041149 mRNA upstream 8073 9904253 ~ 9906790 (-) True XLOC_020908
TCONS_00041150 mRNA upstream 29910 9926090 ~ 9934011 (-) False XLOC_020909
TCONS_00041151 mRNA upstream 30691 9926871 ~ 9930079 (-) False XLOC_020909
TCONS_00041139 other downstream 66642 9824521 ~ 9826469 (-) True XLOC_020903
TCONS_00041137 other downstream 178780 9714214 ~ 9714331 (-) True XLOC_020901
TCONS_00041096 other downstream 1383934 8507547 ~ 8509177 (-) True XLOC_020880
TCONS_00041090 other downstream 1546911 8346075 ~ 8346200 (-) True XLOC_020873
TCONS_00041073 other downstream 2275120 7615739 ~ 7617991 (-) True XLOC_020858
TCONS_00041160 other upstream 180398 10076578 ~ 10079669 (-) False XLOC_020914
TCONS_00041173 other upstream 260222 10156402 ~ 10158106 (-) True XLOC_020918
TCONS_00041196 other upstream 771678 10667858 ~ 10667974 (-) True XLOC_020936
TCONS_00041199 other upstream 867753 10763933 ~ 10764047 (-) True XLOC_020940
TCONS_00041246 other upstream 2688659 12584839 ~ 12584954 (-) True XLOC_020969

Expression Profile

//