RNA id: TCONS_00041151


Basic Information

Item Value
RNA id TCONS_00041151
length 669
RNA type mRNA
GC content 0.39
exon number 3
gene id XLOC_020909
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 9926090 ~ 9934854 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCACCAGCGCAACGCAACGCCGAGTCTTCAGAGCTTGAGATTTTCTTCTCCAACCACATAGCaattctccttcagtgaagcTCATATTACTTTGTCAGTAATTGATGAAATATCGCCATCAACCAGCAAGTGAAGAATAGTTTATGAGGGCACAGTGAGAATATGAGTGATCCAGAATCCTGCACAATAAAACTGGAAGATGTTgaagaacaaacagttttagaCCTGCTGAATGAAAACAAAGAGAAGGAAGAACCGACTAAAAGTGGAGAGAAAAATGACATTAAATCCGCAGAAAAACTGCAGGATCCCTTATTGAAAGTAAAAGACAATCTATCTTTCACATGCCTTCAGTGTAAAAGGAACTTTTTGTGTGAGGAAAGTCTTAATCTTCACATGAAGATCCATAGAGAAGTGAAGCCACACACATCTGATCAATGTGAGAGGATTCCCACAGAAGAAGAAGCCCTTACGGATaacatgaaaatccacactgaGGAGGATACAGTCGGAAAGAAAGCGCACACATGTGATttatgtgggaagagttttcgtAAAACAGGTGATTTAAACATACATCAGAAAAGGCACAAAGGTTTGAGGGATCATGTTTGCTCCGAGTGTGGCAAGACCTTTTAtacaaaaagctgtttaaaaaatcACCAGAA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-648 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDART00000131734

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042341 lncRNA downstream 152828 9752170 ~ 9774043 (-) True XLOC_020902
TCONS_00042340 lncRNA downstream 611699 9278778 ~ 9315172 (-) True XLOC_020897
TCONS_00042339 lncRNA downstream 621069 9276356 ~ 9305802 (-) True XLOC_020896
TCONS_00042338 lncRNA downstream 737495 9187673 ~ 9189376 (-) True XLOC_020895
TCONS_00041119 lncRNA downstream 975187 8939933 ~ 8951684 (-) True XLOC_020893
TCONS_00042342 lncRNA upstream 148681 10078760 ~ 10079624 (-) True XLOC_020914
TCONS_00041171 lncRNA upstream 223593 10153672 ~ 10156708 (-) False XLOC_020918
TCONS_00042343 lncRNA upstream 223593 10153672 ~ 10158106 (-) False XLOC_020918
TCONS_00042344 lncRNA upstream 286713 10216792 ~ 10222529 (-) True XLOC_020919
TCONS_00041176 lncRNA upstream 431651 10361730 ~ 10368325 (-) False XLOC_020921
TCONS_00041149 mRNA downstream 20081 9904253 ~ 9906790 (-) True XLOC_020908
TCONS_00041148 mRNA downstream 25083 9899100 ~ 9901788 (-) True XLOC_020907
TCONS_00041147 mRNA downstream 26493 9898028 ~ 9900378 (-) False XLOC_020907
TCONS_00041146 mRNA downstream 30691 9893111 ~ 9896180 (-) True XLOC_020906
TCONS_00041145 mRNA downstream 36485 9888207 ~ 9890386 (-) True XLOC_020905
TCONS_00041152 mRNA upstream 2688 9932767 ~ 9934854 (-) True XLOC_020909
TCONS_00041153 mRNA upstream 16714 9946793 ~ 9973918 (-) False XLOC_020910
TCONS_00041154 mRNA upstream 35725 9965804 ~ 9974022 (-) True XLOC_020910
TCONS_00041155 mRNA upstream 85517 10015596 ~ 10019768 (-) True XLOC_020911
TCONS_00041156 mRNA upstream 107197 10037276 ~ 10051551 (-) False XLOC_020912
TCONS_00041139 other downstream 100402 9824521 ~ 9826469 (-) True XLOC_020903
TCONS_00041137 other downstream 212540 9714214 ~ 9714331 (-) True XLOC_020901
TCONS_00041096 other downstream 1417694 8507547 ~ 8509177 (-) True XLOC_020880
TCONS_00041090 other downstream 1580671 8346075 ~ 8346200 (-) True XLOC_020873
TCONS_00041073 other downstream 2308880 7615739 ~ 7617991 (-) True XLOC_020858
TCONS_00041160 other upstream 146499 10076578 ~ 10079669 (-) False XLOC_020914
TCONS_00041173 other upstream 226323 10156402 ~ 10158106 (-) True XLOC_020918
TCONS_00041196 other upstream 737779 10667858 ~ 10667974 (-) True XLOC_020936
TCONS_00041199 other upstream 833854 10763933 ~ 10764047 (-) True XLOC_020940
TCONS_00041246 other upstream 2654760 12584839 ~ 12584954 (-) True XLOC_020969

Expression Profile

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