RNA id: TCONS_00041152


Basic Information

Item Value
RNA id TCONS_00041152
length 635
RNA type mRNA
GC content 0.38
exon number 3
gene id XLOC_020909
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 9926090 ~ 9934854 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCACCAGCGCAACCCAACGCCGAGTCTTCAGAGCTTGAGATTTTCTTCTCCAACCACACAGCAATTCTTCCTCAGTGAAGCTAATATTACGTTGATTAATAGTTAATGATGAAATATCACTATTAACCAGCAGGTGAAGAATAGTTTATCAGGGCACAGTAAGAATATGAGTGATCCAGAATCCTGCACAATAAAACTGGAAGATGTTGAAGAGCAAACAGttttagaCCTGCTAAATGAAAACAAAGAGGAGGAACCGATTAAAAGGGGAGAGAAAAATGACATCAAAACTGCAGAAAAACtgtcattgaaaaaaaaagtgaacctTAAACTTCACATGAAGATTCATAAAGAAATGAAGCCACACACATCTGACAAGATTTCCACAGGAGAAGAAGCCCTTACAGATAACATGAAAATCCACTCTGAGGATACAGTGAACGATTGTGATGAGACTTTCACAAATACGGGAGATCTTAACACACAAGTCTTAACTCACACTGGAAAGAAAGTGTACACATGTGATttatgtgggaagagttttcgtGATCCAAGTACATTAAAAATCCATCATAAAAGACACAAAGGTTTGAGGGATCAGGTTTGCTCTACATGTGGCAAGACCTTTTTTACA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-631 Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDART00000136404

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042341 lncRNA downstream 158724 9752170 ~ 9774043 (-) True XLOC_020902
TCONS_00042340 lncRNA downstream 617595 9278778 ~ 9315172 (-) True XLOC_020897
TCONS_00042339 lncRNA downstream 626965 9276356 ~ 9305802 (-) True XLOC_020896
TCONS_00042338 lncRNA downstream 743391 9187673 ~ 9189376 (-) True XLOC_020895
TCONS_00041119 lncRNA downstream 981083 8939933 ~ 8951684 (-) True XLOC_020893
TCONS_00042342 lncRNA upstream 143906 10078760 ~ 10079624 (-) True XLOC_020914
TCONS_00041171 lncRNA upstream 218818 10153672 ~ 10156708 (-) False XLOC_020918
TCONS_00042343 lncRNA upstream 218818 10153672 ~ 10158106 (-) False XLOC_020918
TCONS_00042344 lncRNA upstream 281938 10216792 ~ 10222529 (-) True XLOC_020919
TCONS_00041176 lncRNA upstream 426876 10361730 ~ 10368325 (-) False XLOC_020921
TCONS_00041151 mRNA downstream 2688 9926871 ~ 9930079 (-) False XLOC_020909
TCONS_00041149 mRNA downstream 25977 9904253 ~ 9906790 (-) True XLOC_020908
TCONS_00041148 mRNA downstream 30979 9899100 ~ 9901788 (-) True XLOC_020907
TCONS_00041147 mRNA downstream 32389 9898028 ~ 9900378 (-) False XLOC_020907
TCONS_00041146 mRNA downstream 36587 9893111 ~ 9896180 (-) True XLOC_020906
TCONS_00041153 mRNA upstream 11939 9946793 ~ 9973918 (-) False XLOC_020910
TCONS_00041154 mRNA upstream 30950 9965804 ~ 9974022 (-) True XLOC_020910
TCONS_00041155 mRNA upstream 80742 10015596 ~ 10019768 (-) True XLOC_020911
TCONS_00041156 mRNA upstream 102422 10037276 ~ 10051551 (-) False XLOC_020912
TCONS_00041157 mRNA upstream 109969 10044823 ~ 10051401 (-) False XLOC_020912
TCONS_00041139 other downstream 106298 9824521 ~ 9826469 (-) True XLOC_020903
TCONS_00041137 other downstream 218436 9714214 ~ 9714331 (-) True XLOC_020901
TCONS_00041096 other downstream 1423590 8507547 ~ 8509177 (-) True XLOC_020880
TCONS_00041090 other downstream 1586567 8346075 ~ 8346200 (-) True XLOC_020873
TCONS_00041073 other downstream 2314776 7615739 ~ 7617991 (-) True XLOC_020858
TCONS_00041160 other upstream 141724 10076578 ~ 10079669 (-) False XLOC_020914
TCONS_00041173 other upstream 221548 10156402 ~ 10158106 (-) True XLOC_020918
TCONS_00041196 other upstream 733004 10667858 ~ 10667974 (-) True XLOC_020936
TCONS_00041199 other upstream 829079 10763933 ~ 10764047 (-) True XLOC_020940
TCONS_00041246 other upstream 2649985 12584839 ~ 12584954 (-) True XLOC_020969

Expression Profile

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