RNA id: TCONS_00004021


Basic Information

Item Value
RNA id TCONS_00004021
length 737
RNA type processed_transcript
GC content 0.47
exon number 5
gene id XLOC_002078
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 21434649 ~ 21470593 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGTCGATATTTTGATGAGATCAGTCAGGACACAGGGAAATATTGTTTCGGCGTTGAAGACACACTCAAAGCACTGGAGATGGGTGCAGTGGAGATCCTTATAGTTTACGAGAACCTGGACACTATGCGTTATGTCCTACGCTGtcatggagagaatactacaccGGAAAATGATGAAAAGATCCTCTATCTGACACCTGAACAGGAGAAGGACAAGTCTCATTTCACCGACAAGgagaCTGGTCAGGAGCATGAGCTGATCGAGAGCATGCCGCTGCTTGAGTGGTTTGCCAATAACTACAAGAAGTTTGGGGCCACGCTGGAAATTGTTACAGACAAAAGCCAGGAGGGCTCGCAGTTTGTGAAAGGCTTTGGAGGCATTGGTGGAATCTTGAGGTACCGGGTGGATTTCCAAGGCATGGAGTACCAGGGAGACGACGATGAGTTCTTTGATTTAGATGACTACTAGGTAGTCGGGACTGACATAAAATTCAAATATAAGATTTTCCCCCCTTCACCTACCCCGCAAACGGCAGGGGAGCGAAGGAGATCGAATCAGCAGGAGGGAGAATGATGAGAAAATGGCGGATGGTCTGCGTGTCCCTGGCTTTAGAATACAGCGACTCCATCTCTGGACTGGAAGAGACTGAGTTTTCTCCTCTCCACTAATTACTGGggttacTGTGTTAACTGTGATGTGTGAGTGAGTAAACGTCAGTTCGGCTGTTTAATTCCCT

Function

GO:

id name namespace
GO:0006415 translational termination biological_process
GO:0002184 cytoplasmic translational termination biological_process
GO:0007420 brain development biological_process
GO:0018444 translation release factor complex cellular_component
GO:0005829 cytosol cellular_component
GO:0016149 translation release factor activity, codon specific molecular_function
GO:0003747 translation release factor activity molecular_function
GO:1990825 sequence-specific mRNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-021029-1 Predicted to enable sequence-specific mRNA binding activity and translation release factor activity, codon specific. Acts upstream of or within brain development. Predicted to be located in cytoplasm. Predicted to be part of translation release factor complex. Predicted to be active in cytosol. Orthologous to human ETF1 (eukaryotic translation termination factor 1).

Ensembl:

ensembl_id ENSDART00000135577

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005877 lncRNA upstream 232778 21179484 ~ 21208200 (+) False XLOC_002074
TCONS_00005878 lncRNA upstream 251842 21179547 ~ 21189136 (+) True XLOC_002074
TCONS_00005876 lncRNA upstream 334268 21103921 ~ 21106710 (+) True XLOC_002073
TCONS_00005875 lncRNA upstream 702302 20731614 ~ 20738676 (+) True XLOC_002072
TCONS_00005874 lncRNA upstream 773117 20665016 ~ 20667861 (+) True XLOC_002070
TCONS_00004023 lncRNA downstream 1253 21444665 ~ 21452135 (+) False XLOC_002078
TCONS_00005879 lncRNA downstream 99109 21542521 ~ 21543562 (+) True XLOC_002081
TCONS_00004040 lncRNA downstream 227451 21670863 ~ 21672339 (+) False XLOC_002085
TCONS_00004041 lncRNA downstream 227807 21671219 ~ 21674300 (+) False XLOC_002085
TCONS_00004043 lncRNA downstream 228841 21672253 ~ 21674458 (+) True XLOC_002085
TCONS_00004012 mRNA upstream 11980 21395298 ~ 21428998 (+) True XLOC_002076
TCONS_00004008 mRNA upstream 808199 20628698 ~ 20632779 (+) False XLOC_002068
TCONS_00004009 mRNA upstream 808403 20630444 ~ 20632575 (+) True XLOC_002068
TCONS_00004007 mRNA upstream 814183 20608676 ~ 20626795 (+) True XLOC_002067
TCONS_00004006 mRNA upstream 834992 20590190 ~ 20605986 (+) False XLOC_002067
TCONS_00004022 mRNA downstream 1242 21444654 ~ 21470593 (+) False XLOC_002078
TCONS_00004024 mRNA downstream 1253 21444665 ~ 21470590 (+) True XLOC_002078
TCONS_00004025 mRNA downstream 68083 21511495 ~ 21521507 (+) True XLOC_002079
TCONS_00004026 mRNA downstream 79133 21522545 ~ 21530675 (+) True XLOC_002080
TCONS_00004027 mRNA downstream 116193 21559605 ~ 21647604 (+) False XLOC_002082
TCONS_00004019 other upstream 3668 21434791 ~ 21437310 (+) False XLOC_002078
TCONS_00004020 other upstream 5002 21434794 ~ 21435976 (+) False XLOC_002078
TCONS_00004014 other upstream 36007 21397367 ~ 21404971 (+) False XLOC_002077
TCONS_00004015 other upstream 38812 21399715 ~ 21402166 (+) True XLOC_002077
TCONS_00004013 other upstream 41273 21397320 ~ 21399705 (+) False XLOC_002077
TCONS_00004038 other downstream 227419 21670831 ~ 21674289 (+) False XLOC_002085
TCONS_00004039 other downstream 227445 21670857 ~ 21673021 (+) False XLOC_002085
TCONS_00004042 other downstream 227810 21671222 ~ 21674289 (+) False XLOC_002085
TCONS_00004046 other downstream 258139 21701551 ~ 21818605 (+) False XLOC_002083
TCONS_00004047 other downstream 258139 21701551 ~ 21820057 (+) False XLOC_002083

Expression Profile

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