RNA id: TCONS_00041155


Basic Information

Item Value
RNA id TCONS_00041155
length 2336
RNA type mRNA
GC content 0.33
exon number 2
gene id XLOC_020911
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 10015596 ~ 10019768 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAAAAggcacactggagagaggccataCATGTGTGatcagtgcgggaagagttttgCGCATAAAGGAAATCTTAACGCGCACATGAAAATACACACAGGAGAGAAGCCGTATGCGTGTAATGAATGCGGGAAGAGATTCAAACAAAAGCAAATATTCAACGATCACAttaaaatccacactggagagaggccgcaCAAGTGTGCTCAGTGCGGGAGGAGTTTCACACAAAAGGGAGCCCTTAATGcacacatgaaaatccacaccggagagaagccgcaTTCATGCGAGcaatgcgggaagagtttcacacGGAGACAGAACCTTACCGATCACATAAAAATCCACACCGGAGAAAATCTGCACACTTGTgatcaatgtgggaagagtttcctaAAGTCATGCGTTTTAAAAGAGCATCTGCGTACTCATTCAAGAGAAAGACTGTTTAACTGTGACCAGTGCAGTAAGAAATTCTTTAGAGCCGATGCCTTGAAGGATCACCTGAGAGTTCACACACAGGAGAAGCCTTACATATGTTCCTTTTGCGCAAAGGGTTTTAGACAGATGGGCAATTTAAAAATGCACCAGAAAAGACACAGCGGTGTGAAGGATCATATGTGCACTGAGTGTGGGAAGACTTTCTTTACAGATTATGAGCTTAGAGTACACCAGAGCGCTCATACTGGAGAAAAACCTtataagtgttcacactgtgacaagaccTTTAAACGGCCTGAATATCTGAAAATACATGagaggatccacaccggagaaaagCGATATCGCTGCGATTCTTGTGGGAAGAGGTTCACGCAGTTATCTTCTCTACTCGGTCATACGAGAAATGCTTGCTTGAAATCACATTTGATGGGGTCCAAGTTTCCTGTAGATCAAATAGTAGAGCATGGTGCTAGCAATGCCGAGGTTGATGGTATGATCCCAGCGGAAAGCAACTCAGCAACTGAGAAAATGTGTGCCTTCAATGCAATACAAGTTGTTTTAGATTAAAGCGTCTCCTAAATATAAAAATGAGCATAATGTAACTATTAGCTTTGCTAGTTTATTGTTAAACCACTCTAGTCCAATATTTCAGTATTGTATAATGAttatatacattttcattatgTCAAATTTTCATTCTTACATCCTTATTTGGTCTGTTATTTTGTCAAGTTGGCAAAATTTTGTTGGTTATTTGCACAGAGAAAATTTTTATAATACTTCAGTGACTGAAAATTAACATGCAGTAAAAATTGTTAGCTCAATCAATAGTTTGAGATCATTTTGAAAGGTGTGActcaaaaaagtttaaattagtCTAATATTAGTCTCTCATCTTGTAAAATTTGAATATGTGaatatgaaaatgaaagtgaaagtaaaacatCAATGCTTTCAAAAGCTGTTTTAGTGCCATGCAGTTTGATATTGAAATCATCTATGTaatatttgtgtaatttatttttctgcttCAAATTTTCACAtgaatttttatatattgtaaaaacaatgttatttatttagtttgggAACTTATGACTGAATGTTATGATTTTTTATTCACTGCTTCTTTTGAAGGCTCATCTATCAACCATATTATGTTTGCAGTTTGCACTTAAGCATCTCTTAAATGTTTCACTTTACTTGATACTTGTTTACAATTCATATCTTTGTTCTAAATGTTTTACGTCAAGTTCTATGTAACATGTCCATGAGTcatgttattttttgtaaaaaactaTTCTGTTAGCGcagcgtatttatttgtttgtttggcttGATTTAATTTTTTCCCATTTAAAAGAATGGAGATTtaagtttcattttattaatatgccaaagtatatttatattttggtcacactttacaataaggttgcattagcAAATGTTAGTTAAAGTATttactaatatattattaaaatccaaattccctcttaacattatttaatcactgtaagttaacatgaactaactttattcccattaactaatattaacaaagattaataaacatGGTAATAAGTCTATcgttcattgtttatttatgtaagtaAATACATAACTTATATTAGTAgtaaactaacattaactagtACAACcgcattgtaaagtgttaccttaattttttaagttatatgtTTTAAGTTAATGCATTGCCAAGTTTATAGGTTGACAttgttttttcattaatttataataacaGAATTTGCCTCTGACCCTGTTGCTTCTTTAATGTTTGtgaatttaaatgataaattccTGTTGTTTTGGTTTAGCATttctatttaatgtatttttttatatatataataaaaaataatagtattttC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000162077

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042341 lncRNA downstream 241553 9752170 ~ 9774043 (-) True XLOC_020902
TCONS_00042340 lncRNA downstream 700424 9278778 ~ 9315172 (-) True XLOC_020897
TCONS_00042339 lncRNA downstream 709794 9276356 ~ 9305802 (-) True XLOC_020896
TCONS_00042338 lncRNA downstream 826220 9187673 ~ 9189376 (-) True XLOC_020895
TCONS_00041119 lncRNA downstream 1063912 8939933 ~ 8951684 (-) True XLOC_020893
TCONS_00042342 lncRNA upstream 58992 10078760 ~ 10079624 (-) True XLOC_020914
TCONS_00041171 lncRNA upstream 133904 10153672 ~ 10156708 (-) False XLOC_020918
TCONS_00042343 lncRNA upstream 133904 10153672 ~ 10158106 (-) False XLOC_020918
TCONS_00042344 lncRNA upstream 197024 10216792 ~ 10222529 (-) True XLOC_020919
TCONS_00041176 lncRNA upstream 341962 10361730 ~ 10368325 (-) False XLOC_020921
TCONS_00041154 mRNA downstream 41574 9965804 ~ 9974022 (-) True XLOC_020910
TCONS_00041153 mRNA downstream 41678 9946793 ~ 9973918 (-) False XLOC_020910
TCONS_00041152 mRNA downstream 80742 9932767 ~ 9934854 (-) True XLOC_020909
TCONS_00041150 mRNA downstream 81585 9926090 ~ 9934011 (-) False XLOC_020909
TCONS_00041151 mRNA downstream 85517 9926871 ~ 9930079 (-) False XLOC_020909
TCONS_00041156 mRNA upstream 17508 10037276 ~ 10051551 (-) False XLOC_020912
TCONS_00041157 mRNA upstream 25055 10044823 ~ 10051401 (-) False XLOC_020912
TCONS_00041158 mRNA upstream 29135 10048903 ~ 10050856 (-) True XLOC_020912
TCONS_00041159 mRNA upstream 34568 10054336 ~ 10055744 (-) True XLOC_020913
TCONS_00041161 mRNA upstream 65804 10085572 ~ 10086446 (-) True XLOC_020915
TCONS_00041139 other downstream 189127 9824521 ~ 9826469 (-) True XLOC_020903
TCONS_00041137 other downstream 301265 9714214 ~ 9714331 (-) True XLOC_020901
TCONS_00041096 other downstream 1506419 8507547 ~ 8509177 (-) True XLOC_020880
TCONS_00041090 other downstream 1669396 8346075 ~ 8346200 (-) True XLOC_020873
TCONS_00041073 other downstream 2397605 7615739 ~ 7617991 (-) True XLOC_020858
TCONS_00041160 other upstream 56810 10076578 ~ 10079669 (-) False XLOC_020914
TCONS_00041173 other upstream 136634 10156402 ~ 10158106 (-) True XLOC_020918
TCONS_00041196 other upstream 648090 10667858 ~ 10667974 (-) True XLOC_020936
TCONS_00041199 other upstream 744165 10763933 ~ 10764047 (-) True XLOC_020940
TCONS_00041246 other upstream 2565071 12584839 ~ 12584954 (-) True XLOC_020969

Expression Profile

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