RNA id: TCONS_00042348


Basic Information

Item Value
RNA id TCONS_00042348
length 371
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id XLOC_020948
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 11082942 ~ 11097837 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAGGTGTGCAGTCTGATACCATCACTGATGTTCAAAGCAAAACCTGGTTTAATACAGTAATATTCGCCCAAATCATCAGCACtgacattattgattattaagtGGCTTCTGCTTCCCTCTGAATATTTGCTGCGCAGTTTTCCATCATAATAATCAGCCTCTTGGGTTCCAAAAGTCCTCATGATCATCATCGGACGAGCTGACGGTTTTATCACAAACCAAACTACAGCTTTTAATCTAAACTCACAGGCTAAAGTCACAGTCTCTCCTAAAGTCACCTGTTGATCAGTCAAAGCTACAGTCACAGTCTCTCCTAAAGTCACCTGTTGATCAGTCAAAGCTTCAGTGTGTTGATTCCACACCAGAAAAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042347 lncRNA downstream 155984 10922765 ~ 10926958 (-) True XLOC_020945
TCONS_00041205 lncRNA downstream 165149 10903510 ~ 10917793 (-) True XLOC_020944
TCONS_00041204 lncRNA downstream 181966 10895963 ~ 10900976 (-) True XLOC_020943
TCONS_00042346 lncRNA downstream 371411 10706775 ~ 10711531 (-) True XLOC_020938
TCONS_00042345 lncRNA downstream 371531 10706775 ~ 10711411 (-) False XLOC_020938
TCONS_00042350 lncRNA upstream 5068 11102905 ~ 11104271 (-) True XLOC_020951
TCONS_00041221 lncRNA upstream 508255 11606092 ~ 11614953 (-) False XLOC_020957
TCONS_00041222 lncRNA upstream 511593 11609430 ~ 11614953 (-) True XLOC_020957
TCONS_00042351 lncRNA upstream 574352 11672189 ~ 11674421 (-) True XLOC_020961
TCONS_00042352 lncRNA upstream 599435 11697272 ~ 11698675 (-) True XLOC_020962
TCONS_00041207 mRNA downstream 3874 11070842 ~ 11079068 (-) False XLOC_020947
TCONS_00041208 mRNA downstream 3954 11073765 ~ 11078988 (-) True XLOC_020947
TCONS_00041206 mRNA downstream 28698 10927370 ~ 11054244 (-) True XLOC_020946
TCONS_00041201 mRNA downstream 191729 10814204 ~ 10891213 (-) False XLOC_020942
TCONS_00041203 mRNA downstream 199548 10814257 ~ 10883394 (-) False XLOC_020942
TCONS_00041210 mRNA upstream 25650 11123487 ~ 11136748 (-) False XLOC_020952
TCONS_00041211 mRNA upstream 25652 11123489 ~ 11124419 (-) False XLOC_020952
TCONS_00041212 mRNA upstream 26094 11123931 ~ 11137268 (-) False XLOC_020952
TCONS_00041213 mRNA upstream 26684 11124521 ~ 11136625 (-) True XLOC_020952
TCONS_00041214 mRNA upstream 338610 11436447 ~ 11438627 (-) True XLOC_020953
TCONS_00041199 other downstream 318895 10763933 ~ 10764047 (-) True XLOC_020940
TCONS_00041196 other downstream 414968 10667858 ~ 10667974 (-) True XLOC_020936
TCONS_00041173 other downstream 924836 10156402 ~ 10158106 (-) True XLOC_020918
TCONS_00041160 other downstream 1003273 10076578 ~ 10079669 (-) False XLOC_020914
TCONS_00041139 other downstream 1256473 9824521 ~ 9826469 (-) True XLOC_020903
TCONS_00041246 other upstream 1487002 12584839 ~ 12584954 (-) True XLOC_020969
TCONS_00041251 other upstream 1509496 12607333 ~ 12611301 (-) False XLOC_020970
TCONS_00041252 other upstream 1519312 12617149 ~ 12626105 (-) False XLOC_020970
TCONS_00041253 other upstream 1526429 12624266 ~ 12626079 (-) False XLOC_020970
TCONS_00041266 other upstream 1835648 12933485 ~ 12934589 (-) False XLOC_020979