RNA id: TCONS_00041212


Basic Information

Item Value
RNA id TCONS_00041212
length 1731
RNA type mRNA
GC content 0.47
exon number 10
gene id XLOC_020952
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 11123487 ~ 11137268 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGGGTCTGCAGTATGCtattatttgattaaacatacaATTACTGCAAATTACGATTTTAAAAGTTACCTGAAAGGTCAAGGCAGTCTTGTAGACGGGAAAACTGTGCATAATACTAACCTTATGCTGTGTAAAATCCTTGCAGATAGTTGATGACATGTCACATGTCCTGAAGGTCACTAACctacagacagatggatggatatatggatagatagatagatagacagacagacagacagacagacagacagacagacagacagacagacagacagacagggtcTTGTTTACATCCTTTACGGCTAGAAACGCCTCTGCTGTTAATAATTCCAGTTTAGGTCTAGTAACTTTAcgtaaaattgttacatttacacaatttTCCCCTTCTAAATGTCTCTTCGCTGTAAACAATATAAATTATCAGCATTATCCAACTACATTGGTCGGAATATTGACTTTAACGAACACAAATGTCGGTAAATTCAAGTAAAGTTTGAATCCCGCGGTGGCAGTCGAAGCAGACTGAGGGAAATGTTGTTGCGTCATGACGCACGACGTCACGCGGCTGGCCCTGGTCATGTGACTGGTGTTGCGAGGAAGCGCAGTCCATCAGAAAATCGTCCCGAGATGAATCGAATAATTATGAACGCCGTATTTGCCCTTATAGGACTCTTATCAGGTGTTTTGGGGGACAGTTTGACAGTTTTGCGAAGCCCTCAGTATGTGACTTTTCGGGATGAGCAGTGGCCCATATCGGGTGAAAAGATCCCAGATTTAGTTGCTCTGACCATGGGCTTCTCTGTTCGTGAGGATCTCGATTGGCCAGGTCTGGCTGCCGGTTCACTGTTCCAGCGTCCTCGTGCTAACGCTCTAATCGTTGTGCGTGGCATCGACAGCCTGGACTTTCCAAAAAACGTGTCCTCTTACCCTCTCGAAAATCCGGTTCCGTTCACTCTGGACAGTGTGGCGAATACAATTCACACGCTGTTTGCTGACAGCACGCCTGTGGTCTTACAGCTCGCACCCAGTGAAGAGAGGCTGTATATGATGGGAATGGCCAACACAGTTTTTGAGGATCTTCCTGTCACTCTGCAGCAGATTCGTGGACGTCTGTCTCAGGACGGATCCGTTCTCACGTCCCTTCCTCTCGTCTCTCTCAGCCGCAACAATGAGgctgATCTTCTGTTCCTCTCTGAGGTTCAGGTGCTGTATGACATCTCAGCTCTGTTGCAGAAACACAAGCATCTGGCTAAAGATCCTGCTCCTGATCTTTACTCTCTGGAGCTGGCGGGACTGGAGGAGATTGTTCGCCGCTACGGCACAGACTCACCTCAGTACACCGACGCCATTAGGATCCTTACAATTGCTCTGCAGAAGTTTGCAGATGACGTCTCCAGTGTTTACGGAAACAATGCGGTTGTAGAAGTCGTGACCGTGAAGACTTTTGAAGTCCCTCTGACCAGAAAATCACGCTCCATCCTCGAGTCCAAGCAAATGGGCTCAAGAAGAACCAATCGATTCAAGAACGTGCCTAGTAACCCTGGAAGCCCCTACAACCTGGCCTACAAGTACAACTTTGACTACGCTGTGATCTTCAACATCGTCCTGTGGCTAATGATCGTGTTAGCATTAGCCGTCATCGCTATCTCCTACAACCTCTGGAACATGGATCCGGGATACGATAGCATCATCTACAGGATGACCAATCAGAAGATCCGACTGGACTGA

Function

GO:

id name namespace
GO:0030177 positive regulation of Wnt signaling pathway biological_process
GO:0035622 intrahepatic bile duct development biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function

KEGG:

id description
ko04614 Renin-angiotensin system

ZFIN:

id description
ZDB-GENE-040426-1960 Predicted to enable signaling receptor activity. Acts upstream of or within intrahepatic bile duct development. Predicted to be located in several cellular components, including autophagosome membrane; dendritic spine membrane; and endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane. Is expressed in central nervous system; digestive system; mucus secreting cell; notochord; and yolk syncytial layer. Human ortholog(s) of this gene implicated in X-linked parkinsonism-spasticity syndrome; congenital disorder of glycosylation type II; and syndromic X-linked intellectual disability Hedera type. Orthologous to human ATP6AP2 (ATPase H+ transporting accessory protein 2).

Ensembl:

ensembl_id ENSDART00000178882

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042350 lncRNA downstream 19660 11102905 ~ 11104271 (-) True XLOC_020951
TCONS_00042348 lncRNA downstream 26094 11082942 ~ 11097837 (-) True XLOC_020948
TCONS_00041209 lncRNA downstream 32832 11090338 ~ 11091099 (-) True XLOC_020950
TCONS_00042349 lncRNA downstream 34231 11087404 ~ 11089700 (-) True XLOC_020949
TCONS_00042347 lncRNA downstream 196973 10922765 ~ 10926958 (-) True XLOC_020945
TCONS_00041221 lncRNA upstream 468824 11606092 ~ 11614953 (-) False XLOC_020957
TCONS_00041222 lncRNA upstream 472162 11609430 ~ 11614953 (-) True XLOC_020957
TCONS_00042351 lncRNA upstream 534921 11672189 ~ 11674421 (-) True XLOC_020961
TCONS_00042352 lncRNA upstream 560004 11697272 ~ 11698675 (-) True XLOC_020962
TCONS_00041248 lncRNA upstream 1467050 12604318 ~ 12609544 (-) False XLOC_020970
TCONS_00041207 mRNA downstream 44863 11070842 ~ 11079068 (-) False XLOC_020947
TCONS_00041208 mRNA downstream 44943 11073765 ~ 11078988 (-) True XLOC_020947
TCONS_00041206 mRNA downstream 69687 10927370 ~ 11054244 (-) True XLOC_020946
TCONS_00041201 mRNA downstream 232718 10814204 ~ 10891213 (-) False XLOC_020942
TCONS_00041214 mRNA upstream 299179 11436447 ~ 11438627 (-) True XLOC_020953
TCONS_00041215 mRNA upstream 303437 11440705 ~ 11493236 (-) True XLOC_020954
TCONS_00041216 mRNA upstream 360098 11497366 ~ 11517377 (-) False XLOC_020955
TCONS_00041217 mRNA upstream 362452 11499720 ~ 11520405 (-) True XLOC_020955
TCONS_00041218 mRNA upstream 401124 11538392 ~ 11594414 (-) True XLOC_020956
TCONS_00041199 other downstream 359884 10763933 ~ 10764047 (-) True XLOC_020940
TCONS_00041196 other downstream 455957 10667858 ~ 10667974 (-) True XLOC_020936
TCONS_00041173 other downstream 965825 10156402 ~ 10158106 (-) True XLOC_020918
TCONS_00041160 other downstream 1044262 10076578 ~ 10079669 (-) False XLOC_020914
TCONS_00041139 other downstream 1297462 9824521 ~ 9826469 (-) True XLOC_020903
TCONS_00041246 other upstream 1447571 12584839 ~ 12584954 (-) True XLOC_020969
TCONS_00041251 other upstream 1470065 12607333 ~ 12611301 (-) False XLOC_020970
TCONS_00041252 other upstream 1479881 12617149 ~ 12626105 (-) False XLOC_020970
TCONS_00041253 other upstream 1486998 12624266 ~ 12626079 (-) False XLOC_020970
TCONS_00041266 other upstream 1796217 12933485 ~ 12934589 (-) False XLOC_020979

Expression Profile

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