RNA id: TCONS_00041220


Basic Information

Item Value
RNA id TCONS_00041220
length 725
RNA type mRNA
GC content 0.44
exon number 6
gene id XLOC_020957
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 11596432 ~ 11614973 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAGAGCCGCAGCCAGGAGACACCATCATATATGTGGCGGGAGCGTTCGACCTCTTCCACATCGGTCATGTGGATTTCCTTGAGACGGTTCACAGACAAGCAGAGAAACCTTACGTCATCGTCGGACTGCACTTTGACCAGGAAGTGAACCGCTACAAAGGGAAAAACTACCCCATCATGAATATTCACGAGCGAACCTTGAGTGTGCTCGCTTGCAGATACGTGTCTGAGGTTGTCATCGGGGCTCCGTACGCTGTCGAAAAAGATCTTCTGGATCACTTTAAGGTGGATCTGGTGTGTCATGGGAAAACCAATGTATTTCCTGACGCAGATGGAACCGACCCTTATGCTGAGCCAAAGAAAAGAGGTATTTTCCGCATCCTGGACAGCAGCAACAATCTGACCACTGACGACATTGTTCAGAGAATCATTGAGAACAGGTTTGTAGGAAAATACGAGCAAAAACGCTCACTtgaaatatttatgaaaatatgcAACGATTTTTTTTGTACTATAGGCTGCAGTTTGAAGCCAGGAATCAGAAGAAGGAAGCGAAAGAAATGGCTGTTCTCCAGGCTTTGAAGCGTAAAGATGAATCTGTGAAAAGTGAAGCAGCTCTTGCGAAGAATTAACCAAACCAAGCTAATCGGTATTGTCGTAGAACAGAATCACCCCTGGACTCATTCAATTACATTCAGTAATGAACAGTaaggtattttaaaaaaa

Function

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0005575 cellular_component cellular_component
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko00564 Glycerophospholipid metabolism
ko00440 Phosphonate and phosphinate metabolism

ZFIN:

id description
ZDB-GENE-041010-132 Predicted to enable catalytic activity. Predicted to act upstream of or within phospholipid biosynthetic process. Is expressed in central nervous system; cranial ganglion; epiphysis; and ventral mesoderm. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia. Orthologous to human PCYT2 (phosphate cytidylyltransferase 2, ethanolamine).

Ensembl:

ensembl_id ENSDART00000146026

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042350 lncRNA downstream 494771 11102905 ~ 11104271 (-) True XLOC_020951
TCONS_00042348 lncRNA downstream 501205 11082942 ~ 11097837 (-) True XLOC_020948
TCONS_00041209 lncRNA downstream 507943 11090338 ~ 11091099 (-) True XLOC_020950
TCONS_00042349 lncRNA downstream 509342 11087404 ~ 11089700 (-) True XLOC_020949
TCONS_00042347 lncRNA downstream 672084 10922765 ~ 10926958 (-) True XLOC_020945
TCONS_00041221 lncRNA upstream 14 11606092 ~ 11614953 (-) False XLOC_020957
TCONS_00041222 lncRNA upstream 3352 11609430 ~ 11614953 (-) True XLOC_020957
TCONS_00042351 lncRNA upstream 66111 11672189 ~ 11674421 (-) True XLOC_020961
TCONS_00042352 lncRNA upstream 91194 11697272 ~ 11698675 (-) True XLOC_020962
TCONS_00041248 lncRNA upstream 998240 12604318 ~ 12609544 (-) False XLOC_020970
TCONS_00041218 mRNA downstream 4628 11538392 ~ 11594414 (-) True XLOC_020956
TCONS_00041217 mRNA downstream 78637 11499720 ~ 11520405 (-) True XLOC_020955
TCONS_00041216 mRNA downstream 81665 11497366 ~ 11517377 (-) False XLOC_020955
TCONS_00041215 mRNA downstream 105806 11440705 ~ 11493236 (-) True XLOC_020954
TCONS_00041214 mRNA downstream 160415 11436447 ~ 11438627 (-) True XLOC_020953
TCONS_00041223 mRNA upstream 11442 11617520 ~ 11623063 (-) False XLOC_020958
TCONS_00041224 mRNA upstream 11442 11617520 ~ 11626018 (-) False XLOC_020958
TCONS_00041225 mRNA upstream 14552 11620630 ~ 11626014 (-) True XLOC_020958
TCONS_00041226 mRNA upstream 22360 11628438 ~ 11648094 (-) False XLOC_020959
TCONS_00041227 mRNA upstream 22476 11628554 ~ 11648322 (-) True XLOC_020959
TCONS_00041199 other downstream 834995 10763933 ~ 10764047 (-) True XLOC_020940
TCONS_00041196 other downstream 931068 10667858 ~ 10667974 (-) True XLOC_020936
TCONS_00041173 other downstream 1440936 10156402 ~ 10158106 (-) True XLOC_020918
TCONS_00041160 other downstream 1519373 10076578 ~ 10079669 (-) False XLOC_020914
TCONS_00041139 other downstream 1772573 9824521 ~ 9826469 (-) True XLOC_020903
TCONS_00041246 other upstream 978761 12584839 ~ 12584954 (-) True XLOC_020969
TCONS_00041251 other upstream 1001255 12607333 ~ 12611301 (-) False XLOC_020970
TCONS_00041252 other upstream 1011071 12617149 ~ 12626105 (-) False XLOC_020970
TCONS_00041253 other upstream 1018188 12624266 ~ 12626079 (-) False XLOC_020970
TCONS_00041266 other upstream 1327407 12933485 ~ 12934589 (-) False XLOC_020979

Expression Profile

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