RNA id: TCONS_00041221


Basic Information

Item Value
RNA id TCONS_00041221
length 852
lncRNA type sense_over
GC content 0.52
exon number 6
gene id XLOC_020957
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 11596432 ~ 11614973 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCTACGCTGCGCACACTCTCGGGGCGTCTGGAAGGGCGTAGAGATTTCGCCGGTCATTCATATCCGCACGGACCATTACTACCGCTTTTAACGCCAGTCAGGGAACTTCATAGGCTTCAAGAAGATGATCAGGAACGGAAGCCATGCGGTGGAGCAGGAGGACCGCGCACAGCCGAGCTCCTCGACCCACAGCCCCGAGAAGAGGAAGCGGGTGATCCGGGTGTGGTGTGACGGCTGctatgacatggtgcattacgGCCACTCAAACCAGTTACGCCAGGCCAAGGCGATGGGAGATTATCTGGTCGTAGGAGTTCACACAGACGAGGAAATAGCCAAGCACAAGGGTCCTCCAGTCTTCACACAGGCAGAGCGTTATAAAATGATACGGGCCATCAAGTGGGTGGATGAGATCGTGGAAGGGGCTCCGTATGTTACTACGCTGGAGACGCTGGACAAGTACAACTGCGATTTCTGCGTGCACGGAGATGACATCACATTGACTGTGGATGGTAAGGATACATACGATGAGGTGAAGAGAACAGGGAGATACCGGTAAAGTTCAACAGGCCTCGCACATACACCTGTGGCACACCACTAGATTCTCACACAGTGGTGGGTGCAACAatatctgtctttttttttttggtcaacagGGAGTGCAAACGCACACAAGGAGTGTCTACGACAGACCTAGTGGGTCGAATGCTCCTGTTAACAAAAGCGCACCACAGTAACATTGACAATGCAGCTTATCAAGTGCACACGGATAATTTTGGGAAGGGTCCTAAAGGACACAGCCCATGGACCGGCGTCTCTCAGTTCCTGCAGACGTCTCAAAAGATCATCCAG

Function

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0005575 cellular_component cellular_component
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko00564 Glycerophospholipid metabolism
ko00440 Phosphonate and phosphinate metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042350 lncRNA downstream 501821 11102905 ~ 11104271 (-) True XLOC_020951
TCONS_00042348 lncRNA downstream 508255 11082942 ~ 11097837 (-) True XLOC_020948
TCONS_00041209 lncRNA downstream 514993 11090338 ~ 11091099 (-) True XLOC_020950
TCONS_00042349 lncRNA downstream 516392 11087404 ~ 11089700 (-) True XLOC_020949
TCONS_00042347 lncRNA downstream 679134 10922765 ~ 10926958 (-) True XLOC_020945
TCONS_00042351 lncRNA upstream 57236 11672189 ~ 11674421 (-) True XLOC_020961
TCONS_00042352 lncRNA upstream 82319 11697272 ~ 11698675 (-) True XLOC_020962
TCONS_00041248 lncRNA upstream 989365 12604318 ~ 12609544 (-) False XLOC_020970
TCONS_00042353 lncRNA upstream 989365 12604318 ~ 12611301 (-) False XLOC_020970
TCONS_00041254 lncRNA upstream 1009533 12624486 ~ 12626063 (-) True XLOC_020970
TCONS_00041220 mRNA downstream 14 11599042 ~ 11606078 (-) False XLOC_020957
TCONS_00041218 mRNA downstream 11678 11538392 ~ 11594414 (-) True XLOC_020956
TCONS_00041217 mRNA downstream 85687 11499720 ~ 11520405 (-) True XLOC_020955
TCONS_00041216 mRNA downstream 88715 11497366 ~ 11517377 (-) False XLOC_020955
TCONS_00041215 mRNA downstream 112856 11440705 ~ 11493236 (-) True XLOC_020954
TCONS_00041223 mRNA upstream 2567 11617520 ~ 11623063 (-) False XLOC_020958
TCONS_00041224 mRNA upstream 2567 11617520 ~ 11626018 (-) False XLOC_020958
TCONS_00041225 mRNA upstream 5677 11620630 ~ 11626014 (-) True XLOC_020958
TCONS_00041226 mRNA upstream 13485 11628438 ~ 11648094 (-) False XLOC_020959
TCONS_00041227 mRNA upstream 13601 11628554 ~ 11648322 (-) True XLOC_020959
TCONS_00041199 other downstream 842045 10763933 ~ 10764047 (-) True XLOC_020940
TCONS_00041196 other downstream 938118 10667858 ~ 10667974 (-) True XLOC_020936
TCONS_00041173 other downstream 1447986 10156402 ~ 10158106 (-) True XLOC_020918
TCONS_00041160 other downstream 1526423 10076578 ~ 10079669 (-) False XLOC_020914
TCONS_00041139 other downstream 1779623 9824521 ~ 9826469 (-) True XLOC_020903
TCONS_00041246 other upstream 969886 12584839 ~ 12584954 (-) True XLOC_020969
TCONS_00041251 other upstream 992380 12607333 ~ 12611301 (-) False XLOC_020970
TCONS_00041252 other upstream 1002196 12617149 ~ 12626105 (-) False XLOC_020970
TCONS_00041253 other upstream 1009313 12624266 ~ 12626079 (-) False XLOC_020970
TCONS_00041266 other upstream 1318532 12933485 ~ 12934589 (-) False XLOC_020979

Expression Profile

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