RNA id: TCONS_00041223


Basic Information

Item Value
RNA id TCONS_00041223
length 820
RNA type mRNA
GC content 0.43
exon number 4
gene id XLOC_020958
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 11617520 ~ 11626018 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACAGAGACAGCAGACAGTTTTTTGGCGAGGGCTCCGGGTTTGACGACCATGAAGAGACATTCAGAGGGAACTTTCTCCAACGACTACAGCAAATACCTGGAGACCAGAAGAGCACAAGACTTCGTTCAGTGGCTCATGAACGCTAAGAGAAATGGtgGTTCTGTCAAACGTCATGCAGAGGGCACCTACACCAGCGACGTGAGCTCATACCTGCAAGACCAGGCGGCCCAGAGCTTTGTGGCCTGGCTAAAATCCGGACAACCCAAACCAGATGTTGCAAACAACAAAGGTGCAAATATGGCGCAAAGGCGACATGTAGACGGCAGTTTCACCAGTGACGTCAACAAGGTGTTGGACAGCATCGCAGCTAAAGAGTATTTACAATGGGTGATGAACTCGAAGGCGTCAGGGACAAGtGGCAAACGTGGTGGGAATCAATGAAGAACCGACGAGCTTTCCTGACATTTGGATCCTGAAGGGGATTCGATCATCAAAACGAATGAAAGCCATAACGCTTACCGGCAAAATAGAGACAAATCTTGAAATCGAAAgccatattgttttatttttttcaacatcaaGCACTgtggttattatttattttccctaGTGTCAAAGAACATTATGTAAGTTGgtataacaacaaaaaaagacttatttttcTATAGTTTTGAGCTATTTTCTATGTGTGCTATGAAAAACAAACTGGGGTGAATGCACGAAACGCTCAGGTAAAAAGTGAAGATTTACGTGTGCCACTGCTGTATCAAAGTGCTTTGGAAAAtggtgaaaaaaaatgaataaacattttcatattcc

Function

GO:

id name namespace
GO:0042594 response to starvation biological_process
GO:0003323 type B pancreatic cell development biological_process
GO:0005576 extracellular region cellular_component
GO:0031769 glucagon receptor binding molecular_function
GO:0005179 hormone activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-010219-1 Enables glucagon receptor binding activity. Acts upstream of or within response to starvation and type B pancreatic cell development. Predicted to be located in extracellular region. Is expressed in digestive system; endocrine system; and endoderm. Human ortholog(s) of this gene implicated in Alzheimer's disease and prediabetes syndrome. Orthologous to human GCG (glucagon).

Ensembl:

ensembl_id ENSDART00000145653

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00041221 lncRNA downstream 2567 11606092 ~ 11614953 (-) False XLOC_020957
TCONS_00041222 lncRNA downstream 2567 11609430 ~ 11614953 (-) True XLOC_020957
TCONS_00042350 lncRNA downstream 513249 11102905 ~ 11104271 (-) True XLOC_020951
TCONS_00042348 lncRNA downstream 519683 11082942 ~ 11097837 (-) True XLOC_020948
TCONS_00041209 lncRNA downstream 526421 11090338 ~ 11091099 (-) True XLOC_020950
TCONS_00042351 lncRNA upstream 49126 11672189 ~ 11674421 (-) True XLOC_020961
TCONS_00042352 lncRNA upstream 74209 11697272 ~ 11698675 (-) True XLOC_020962
TCONS_00041248 lncRNA upstream 981255 12604318 ~ 12609544 (-) False XLOC_020970
TCONS_00042353 lncRNA upstream 981255 12604318 ~ 12611301 (-) False XLOC_020970
TCONS_00041254 lncRNA upstream 1001423 12624486 ~ 12626063 (-) True XLOC_020970
TCONS_00041219 mRNA downstream 2547 11596432 ~ 11614973 (-) False XLOC_020957
TCONS_00041220 mRNA downstream 11442 11599042 ~ 11606078 (-) False XLOC_020957
TCONS_00041218 mRNA downstream 23106 11538392 ~ 11594414 (-) True XLOC_020956
TCONS_00041217 mRNA downstream 97115 11499720 ~ 11520405 (-) True XLOC_020955
TCONS_00041216 mRNA downstream 100143 11497366 ~ 11517377 (-) False XLOC_020955
TCONS_00041226 mRNA upstream 5375 11628438 ~ 11648094 (-) False XLOC_020959
TCONS_00041227 mRNA upstream 5491 11628554 ~ 11648322 (-) True XLOC_020959
TCONS_00041228 mRNA upstream 34076 11657139 ~ 11661724 (-) True XLOC_020960
TCONS_00041229 mRNA upstream 87404 11710467 ~ 11714158 (-) False XLOC_020963
TCONS_00041230 mRNA upstream 87451 11710514 ~ 11714106 (-) False XLOC_020963
TCONS_00041199 other downstream 853473 10763933 ~ 10764047 (-) True XLOC_020940
TCONS_00041196 other downstream 949546 10667858 ~ 10667974 (-) True XLOC_020936
TCONS_00041173 other downstream 1459414 10156402 ~ 10158106 (-) True XLOC_020918
TCONS_00041160 other downstream 1537851 10076578 ~ 10079669 (-) False XLOC_020914
TCONS_00041139 other downstream 1791051 9824521 ~ 9826469 (-) True XLOC_020903
TCONS_00041246 other upstream 961776 12584839 ~ 12584954 (-) True XLOC_020969
TCONS_00041251 other upstream 984270 12607333 ~ 12611301 (-) False XLOC_020970
TCONS_00041252 other upstream 994086 12617149 ~ 12626105 (-) False XLOC_020970
TCONS_00041253 other upstream 1001203 12624266 ~ 12626079 (-) False XLOC_020970
TCONS_00041266 other upstream 1310422 12933485 ~ 12934589 (-) False XLOC_020979

Expression Profile

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