RNA id: TCONS_00041229


Basic Information

Item Value
RNA id TCONS_00041229
length 1085
RNA type mRNA
GC content 0.45
exon number 2
gene id XLOC_020963
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 11710467 ~ 11714158 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCACTTTACAGAGAGATGTCTGGGTATAAAAGAGCTGCTGTGGGATGGGCCTGAACCAGCACAGCTCCACAACTCTACCCCCTTCCACAGGTGCCGCCACCAGACGAACCTCTGCAGAATGGGCCGGGTGAGTACGAAGGTGATCAGGACACTCTGCTCCAATTATTGATACTACTTTTTGATAGTCGATGCAGAGATGGCTGCaatagcatttttttattatttatatatatatatatatatatatatatatatatatatatatatatatatatatacatacagtagatTGTAATATTGTATTCTTATATAATACATTTGAATGATAACAAACCTGTAATGCAACCAGACATAGTTCCTTACAATAAAAccctacaataaaataaaatttcactgTTTCCTCCATGCAGATAATTTTCTTCGAGGACAAGAATTTCCAGGGTCGTCGACACGAGTGCGATAGCGACTGTTCGGACTTCCATACGTACCTGAACCGCTGTAACTCCATCCGCGTGGAGAGTGGGGCCTGGGTGGTCTATGAGAGACCCAACTTCATAGGCTACCAGTATGTTCTGACCAGGGGCGAATATCCGGATTACCAACGCTGGATGGGTCTGAACGACCGCCTCTGCTCCTGCAAGATGATCCACTTCGTAAGCGGTAGTGAGCATAAGATCCAACTCTATGACAAAGGAGATTTTGCCGGCCAGGTGTACGAGACCACCGAGGATTGTCCATCCGTGGTGGAGCGTTTCCGGACACGCGAGGTCCACTCCTGTAAGGTACTGGATGGGATCTGGATCTTCTACGAGCACCCAAACTATAGGGGGCGCCAGTATCTGCTGCAGAAGGGGGAATATCGTAAGCCCGTGGACTGGGGCGCAGTTTGCCCCACGGTTCAGTCCTTCAAACGCTTGACGGAGTGACGTCTGACCTGTAAATCCATCCATCTGCAGTTCTTCTTTACCTCCAAAACACCCGACCACGAAAGCAGCAACATGCCTGTGCTGAATTAATAAACGTGTGGTTGCAAATCAAGCTGTTGTTTGTTGACTTATTTTATACGTTTTAAACTACAAACTACA

Function

GO:

id name namespace
GO:0002088 lens development in camera-type eye biological_process
GO:0007601 visual perception biological_process
GO:0005575 cellular_component cellular_component
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050223-4 Predicted to be a structural constituent of eye lens. Predicted to be involved in lens development in camera-type eye and visual perception. Is expressed in eye and lens. Human ortholog(s) of this gene implicated in cataract 20 multiple types. Orthologous to human CRYGS (crystallin gamma S).

Ensembl:

ensembl_id ENSDART00000183743

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042352 lncRNA downstream 11792 11697272 ~ 11698675 (-) True XLOC_020962
TCONS_00042351 lncRNA downstream 36046 11672189 ~ 11674421 (-) True XLOC_020961
TCONS_00041221 lncRNA downstream 95514 11606092 ~ 11614953 (-) False XLOC_020957
TCONS_00041222 lncRNA downstream 95514 11609430 ~ 11614953 (-) True XLOC_020957
TCONS_00042350 lncRNA downstream 606196 11102905 ~ 11104271 (-) True XLOC_020951
TCONS_00041248 lncRNA upstream 890160 12604318 ~ 12609544 (-) False XLOC_020970
TCONS_00042353 lncRNA upstream 890160 12604318 ~ 12611301 (-) False XLOC_020970
TCONS_00041254 lncRNA upstream 910328 12624486 ~ 12626063 (-) True XLOC_020970
TCONS_00041257 lncRNA upstream 984963 12699121 ~ 12700988 (-) False XLOC_020972
TCONS_00042354 lncRNA upstream 1063731 12777889 ~ 12786441 (-) True XLOC_020975
TCONS_00041228 mRNA downstream 48743 11657139 ~ 11661724 (-) True XLOC_020960
TCONS_00041227 mRNA downstream 62145 11628554 ~ 11648322 (-) True XLOC_020959
TCONS_00041226 mRNA downstream 62373 11628438 ~ 11648094 (-) False XLOC_020959
TCONS_00041224 mRNA downstream 84449 11617520 ~ 11626018 (-) False XLOC_020958
TCONS_00041225 mRNA downstream 84453 11620630 ~ 11626014 (-) True XLOC_020958
TCONS_00041233 mRNA upstream 3271 11717429 ~ 11724563 (-) False XLOC_020964
TCONS_00041232 mRNA upstream 3271 11717429 ~ 11724563 (-) False XLOC_020964
TCONS_00041234 mRNA upstream 4622 11718780 ~ 11729350 (-) True XLOC_020964
TCONS_00041235 mRNA upstream 63895 11778053 ~ 11833334 (-) False XLOC_020965
TCONS_00041236 mRNA upstream 66878 11781036 ~ 11833317 (-) False XLOC_020965
TCONS_00041199 other downstream 946420 10763933 ~ 10764047 (-) True XLOC_020940
TCONS_00041196 other downstream 1042493 10667858 ~ 10667974 (-) True XLOC_020936
TCONS_00041173 other downstream 1552361 10156402 ~ 10158106 (-) True XLOC_020918
TCONS_00041160 other downstream 1630798 10076578 ~ 10079669 (-) False XLOC_020914
TCONS_00041139 other downstream 1883998 9824521 ~ 9826469 (-) True XLOC_020903
TCONS_00041246 other upstream 870681 12584839 ~ 12584954 (-) True XLOC_020969
TCONS_00041251 other upstream 893175 12607333 ~ 12611301 (-) False XLOC_020970
TCONS_00041252 other upstream 902991 12617149 ~ 12626105 (-) False XLOC_020970
TCONS_00041253 other upstream 910108 12624266 ~ 12626079 (-) False XLOC_020970
TCONS_00041266 other upstream 1219327 12933485 ~ 12934589 (-) False XLOC_020979

Expression Profile

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