RNA id: TU1283441


Basic Information

Item Value
RNA id TU1283441
length 392
lncRNA type intronic
GC content 0.51
exon number 2
gene id G1128290
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 93765304 ~ 93765827 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAAACGAGACATGAGGCATGAGTCAGATGACCCTAGGCACTGTATTAATGATGTCAGGAAGAAGGAATCCAGTGTaacacatggggatgtgtgaaattCACTCCTTAGCCTGAAAGATCCCCACCTGCTACCGAATAGCTGGATAAGACACTTCAGGAGGGTGGTCAGGTGTGTTTGCGAGGCAGAGATTCTGGGTCAGAGCCTTGGTATGAGCCAAATCAGGAGGGCGGTCAGGTGTGTTTACGAGGCAGAGATTCTGGGTTAGAGCCTTGGTATGAGCCAAATCAGGAGGGCGGTCAGGTGTGTTTGCGAGGCAGAGATTCTGGGTTAGAGCCGTGGTATGAGCCAAATCAGGAGGAAGCGGTACTAAGCAAACAGAGTGATGTCTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1283419 lncRNA upstream 7093 93729017 ~ 93758211 (+) False G1128273
TU1283429 lncRNA upstream 19459 93744700 ~ 93745845 (+) True G1128280
TU1283426 lncRNA upstream 22762 93738529 ~ 93742542 (+) True G1128278
TU1283420 lncRNA upstream 34104 93729017 ~ 93731200 (+) True G1128273
TU1283416 lncRNA upstream 45480 93719478 ~ 93719824 (+) True G1128270
TU1283447 lncRNA downstream 33758 93799585 ~ 93802782 (+) True G1128296
TU1283456 lncRNA downstream 55829 93821656 ~ 93822511 (+) True G1128304
TU1283462 lncRNA downstream 68300 93834127 ~ 93835483 (+) False G1128310
TU1283463 lncRNA downstream 68300 93834127 ~ 93835483 (+) True G1128310
TU1283533 lncRNA downstream 133848 93899675 ~ 93900744 (+) False G1128355
XM_036939254.1 mRNA upstream 49214 93708982 ~ 93716090 (+) False LOC110485283
XM_036939243.1 mRNA upstream 163165 93544837 ~ 93602139 (+) False LOC110534257
XM_036939261.1 mRNA upstream 252086 93503292 ~ 93513218 (+) True aspdh
XM_036939256.1 mRNA upstream 268289 93490578 ~ 93497015 (+) False LOC110487438
XM_036939252.1 mRNA downstream 70188 93836015 ~ 93867992 (+) False LOC118937785
XM_036939251.1 mRNA downstream 78988 93844815 ~ 93867992 (+) True LOC118937785
XR_005035216.1 mRNA downstream 141208 93907035 ~ 93922982 (+) True LOC118937789
XM_036939555.1 mRNA downstream 157484 93923311 ~ 93934388 (+) True LOC110514006
XR_005035215.1 mRNA downstream 213851 93979678 ~ 93990780 (+) True LOC118937788
TU1283325 other upstream 163179 93593010 ~ 93602125 (+) False LOC110534257
TU1283301 other upstream 308344 93455845 ~ 93456960 (+) True G1128189
TU1283176 other upstream 493044 93271888 ~ 93272260 (+) True G1128105
TU1282791 other upstream 873711 92877547 ~ 92891593 (+) True LOC110514489
TU1282545 other upstream 1103239 92651458 ~ 92662065 (+) True G1127628
TU1283472 other downstream 76942 93842769 ~ 93843097 (+) True G1128318
TU1283478 other downstream 299860 94065687 ~ 94083799 (+) False LOC110485300
TU1283489 other downstream 299860 94065687 ~ 94084170 (+) True LOC110485300
TU1284420 other downstream 971942 94737769 ~ 94833934 (+) False G1129047
TU1284417 other downstream 1065602 94831429 ~ 94833934 (+) True G1129047

Expression Profile