RNA id: TU1283447


Basic Information

Item Value
RNA id TU1283447
length 3161
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G1128296
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 93799585 ~ 93802782 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTAAATCATTCCATTTGTTATTTCATTACAGTTACTAATAAGGCCTAAGTTACGCTGTGTTGCCATGATGATGTTTGTGGAGGATTCTGTTCTCTCTGCAGTCTCCGTTGCAGCTACTAGCTTTGCTTTGATGGTTATAGCTGTGCAGAGCACTCAGAAATCCCAGTTTATATCTAATGACATGAATGGGCAGAGCTGGGTGGTAAACTCACCaggcaggatcaatgagttagccagggTAAACTCAACACTGAGAAATACAGTAACAGTTGACCTGGATAAACTCAACACTGAGAAATACAGTAACAGTTGACCTGGGTAAACTCAACACTGAGAAATACAGTAACAGTTGACCTGGATAAACTCAACACTGAGAAATACAGTAACAGTTGATTGTCTTGATCAAGGGTGCATAACCTCAGGCCCTCGACATCCACAGTCCTGCTAGGTTAGTGTTTCTCCCTGGTACTTATGATCAACTAATGATTGGCTGACGTGTGCACACACCTCGTTTCCCAGCGACAAATCAATCACTGGTAACAAGGCAAGGATGAAAAAACAGTTATTTTCACACTACGGAGTCGatctgagccaagctgaactgGCCTGCAAAGGACAAGGTAGTAAGAATGGTTAGATGGTTAGGATCAGAACGACAGTGTAAATGAGTAGAACCAGAACAGTATGGTTAGGATCAGAACGGCAGTGTGACTAGGTTAAAGGACTAGTCTGCTTTGAGGACTGAGACTTTGCACCATGGTCTCAAGATCATAAGGGAGGTAAAGTTGCAGCTCATTGAAAGTAAGAGTCAAACATACATATACACTATGTACAAAATATATGATTAGATACTTAGCTCACTGGCTCTGCCCGGTGACCTGCCCCCTGATGGGGCCTCTCTAGCTCACTGGCTCTGCCCGGTGACCTGCCCCCTGATGGGGCCTCTCTAGCTCACTGGCTCTGCCCGGTGACCTGCCCCCTGATGGGGCCTCTCTAGCTCACTGGCTCTGCCCGGTAACCTGCCCCCTGATGGGGCCTCTCTAGCTCACTGGCTCTGCCCGGTGACCTGCCCCCTGATGGGGCCTCTCTAGCTCACTGGCTCTGCCCGGTAACCTGCCCCCTGATGGGGCCTCTCTAGCTCACTGGCTCTGCCCGGTGACCTGCCCCCTGATGGGGCCTCTCTAGCTCACTGGCTCTGCCCGGTAACCTGCCCCCTGATGGGGCCTCTCTAGCTCACTGGCTCTGCCCGGTAACCTGCCCCCTGATGGGGCCTCCCTAGCTCACTGGCTCTGCCCGGTAACCTGCCCCCTGATGGGGCCTCTCTAGCTCACTGGTTCTGCCCGGTGACCTGCCCCCTGATGGGGCCTCCCTAGCTCACTGGTTCTGCCTGGTGACCAGCCCCCTGGTGGGGCCTCCCTAGCTCACTGGTTCTGCCTGGTGACCTGCCCCCTGATGGGGCCTCCCTAGCTCACTGGTTCTGCCCGGTAACCTGCCCCCTGATGGGGCCTCCCTAGCTCACTGGCTCTGCCCGGTAACCTGCCCCCTGATGGGGCCTCTCTAGCTCACTGGTTCTGCCCGGTGACCTGCCCCCTGATGCCTCCCTAGCTCACTGGTTCTGCCTGGTGACCAGCCCCCTGGTGGGGCCTCCCTAGCTCACTGGTTCTGCCTGGTGACCTGCCCCCTGGTGGggcctctgacagacagacagacacgttggGTCAGAGGCAACAATAGGCATCAGGAGATGATGTGAATGTTAAGTTCCCTTTCAGTCCGTTCACTACTATTAacactactaacacacagctatgTGGATTGTACTGTTCCTCAATACCATCACATACTACAGGCCAGTAAAACCCCAGACACAAGGCATGTTATTTTCTAAACATCTTTTAGAAGTTACTTTTGCAGGATCTTTGTTTATGGGCGGTTACTGGTCATACCGAGTACCACTGCACAACTTTCCCAATCTTTGCCCCAAATTCAGCTCCTTACTTTCTTGAACTAAGTTTAGCACCCTAATAAAAAAAACTGCATATCAGAatatatcaaatatatattttgtggCTCTCTGGATCAGAGCCTCTACTTGTCTTACAAGAGTATTACTATGCAATATACAAGCTGGACTTTAAAGTCCTTCGCTTCCCTCAATACTCCTCACCTTCAGAAGTGTCTTTGGAGCAGAATCAAGTCAAACTACAAGAAACCCAAGAATACAAGTCATACTTATAATTGACCTGTGAGCAGCTAGTTGAAACTGTCATCACAGTTCAAGGAACAGGATCCTGGGTGTGTTAATACAGCACTTGAACCATAAGGCACTTCCTACAGTACTTATCAGTATAATGATAGGTCACCTATAATAAGGCACTTCCTACAGTACTTATCAGTATAATGATAGGTAACCTATAATAAGGCACTCCTTACAGTACTTATCAGTATAATGATAGGTCACCTATAATAAGGCACTTCCTACAGTACTTATCAGTATAATGATAGGTCACCTATAATAAGGCACTTCCTACAGTACTTATCAGTATAATGATAGGTCACCTATAATAAGGCACTTCCTACAGTACTTATCAGTATAATGATAGGTCACCTATAATAAGGCACTTCCTACAGTACTTATCAGTATAATGATAGGTCACCTATAATAAGGCACTTCTTACAGTACTTATCAGTATAATGATAGGTCACCTATAATAAGGCACTTCGAACAGTACTTATCAGTATAATGATAGGTCACCTATAATAAGGCACTTCCTACAGTACTTATCAGTATAATGATAGGTCACCTATAATAAGGCACTTCCTACAGTACTTATCAGTATAATGATAGGTCACCTATAATAAGGCACTTCCTACAGTACTTATCAGTATAATGATAGGTCACCTATAATAAGGCACTTCCTACAGTACTTATCAGTATAATGATAGGTCACCTATAATAAGGCACTTCCTACAGTACTTATCAGTATAATGATAGGTCACCTATAATAAGGCACTTCCTACAGTACTTATCAGTATAATGATAGGTCACCTATAATAAGGCACTTCCTACAGTACTTATCAGTATAATGATAGGTCACCTATAATAAGGCACTTCGAACAGTACTTATCAGTATAATGATAGGTCACCTATAATAAGGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1283441 lncRNA upstream 33758 93765304 ~ 93765827 (+) True G1128290
TU1283419 lncRNA upstream 41374 93729017 ~ 93758211 (+) False G1128273
TU1283429 lncRNA upstream 53740 93744700 ~ 93745845 (+) True G1128280
TU1283426 lncRNA upstream 57043 93738529 ~ 93742542 (+) True G1128278
TU1283420 lncRNA upstream 68385 93729017 ~ 93731200 (+) True G1128273
TU1283456 lncRNA downstream 18874 93821656 ~ 93822511 (+) True G1128304
TU1283462 lncRNA downstream 31345 93834127 ~ 93835483 (+) False G1128310
TU1283463 lncRNA downstream 31345 93834127 ~ 93835483 (+) True G1128310
TU1283533 lncRNA downstream 96893 93899675 ~ 93900744 (+) False G1128355
TU1283535 lncRNA downstream 96893 93899675 ~ 93900776 (+) True G1128355
XM_036939254.1 mRNA upstream 83495 93708982 ~ 93716090 (+) False LOC110485283
XM_036939243.1 mRNA upstream 197446 93544837 ~ 93602139 (+) False LOC110534257
XM_036939261.1 mRNA upstream 286367 93503292 ~ 93513218 (+) True aspdh
XM_036939256.1 mRNA upstream 302570 93490578 ~ 93497015 (+) False LOC110487438
XM_036939252.1 mRNA downstream 33233 93836015 ~ 93867992 (+) False LOC118937785
XM_036939251.1 mRNA downstream 42033 93844815 ~ 93867992 (+) True LOC118937785
XR_005035216.1 mRNA downstream 104253 93907035 ~ 93922982 (+) True LOC118937789
XM_036939555.1 mRNA downstream 120529 93923311 ~ 93934388 (+) True LOC110514006
XR_005035215.1 mRNA downstream 176896 93979678 ~ 93990780 (+) True LOC118937788
TU1283325 other upstream 197460 93593010 ~ 93602125 (+) False LOC110534257
TU1283301 other upstream 342625 93455845 ~ 93456960 (+) True G1128189
TU1283176 other upstream 527325 93271888 ~ 93272260 (+) True G1128105
TU1282791 other upstream 907992 92877547 ~ 92891593 (+) True LOC110514489
TU1282545 other upstream 1137520 92651458 ~ 92662065 (+) True G1127628
TU1283472 other downstream 39987 93842769 ~ 93843097 (+) True G1128318
TU1283478 other downstream 262905 94065687 ~ 94083799 (+) False LOC110485300
TU1283489 other downstream 262905 94065687 ~ 94084170 (+) True LOC110485300
TU1284420 other downstream 934987 94737769 ~ 94833934 (+) False G1129047
TU1284417 other downstream 1028647 94831429 ~ 94833934 (+) True G1129047

Expression Profile