RNA id: TCONS_00041235


Basic Information

Item Value
RNA id TCONS_00041235
length 6443
RNA type mRNA
GC content 0.44
exon number 26
gene id XLOC_020965
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 11778053 ~ 11833334 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACGGAGTGGGGACCGTAATGACCGCACGCTTCCGGTTGCCTGCTGGCAGATCTTACGATGTGGGAGCGTTGGAGGAGGCCAGAGAGAGACAGCACGCGCAGGTGGAGTGTAACGTTTTACTGCTGGACAACACAGTGCAGACCTTCAGAGTCAATAAGCAAGATCAGGGGCAGATCTTGTTGGACGTAGTGTACAAACACTTGGAACTAACAGAGCGAGATTACTTCGGCCTTCAGCTAGCAGACGACACTTCTGACACCCAGaggtgGCTGGATCCAAACAAACCTGTTAGAAAACAGCTCAAAAGGCCgtctccgcataatctgaggttCAGGGTGAAGTTTTTTGTGGGCGACCCTGGTAAATTACAGGAAGAGTACACAAGGTATTTGTACTTTCTGCAACTGAAGCAGGATATTCTGAGCGGCAGGCTTCCCTGTCCACAAAATACTGCAGTTCTTCTAGCGTCTTATGCAGTTCAGGCTGAACTGGGAGACTACAGTCACTCTGAGCATTTGTCCGGCTATCTGTCGGAGTACAGCTTCATTCCCAATCCTCCGCAGGACTTCGAAAAGGAGGTCGCTAAACTTCACCAAGAGCACAATGGACTCACACCAGCTCAGTCCGAGTTTAACTACTTGAATGCTGCACGGACGCTGGAGCTCTACGGCGTGGAATTGCACTATGCTCGGGACCACTGTAACACAGAGATTTACGTTGGAGTTTTGTCCGCCGGCATCTCCGTCTATAAGGACAGGGTACGAGTCAACCACTTTCCATGgtttaaaattgtaaaaatatcttttaaatcGAAGCAGTTTTTTATACAACTAAGAAAAGAACTGACTGAGTGCAGAGAGTCTCTGCTGGGCTTCAACATGATGAACTATCGGGCCTGTAAGAACCTGTGGAAGTCCTGCGTGGAGAACCACACGTTCTTCAGACTGGAGCGGCCCGTTCCTCCAGAGAGAAACCTCTTCCTGCACTACTTCACCCTCGGCTCCAAGTTCCGCTACTGCGGGAGGACGGAGGCTCAGTCTGTACAGTACGGGAAGGAAAGAGGCAACAAGAACAGAGTTTTCGCACGGTCACCAAGTAAGCCTCTGGTCAGGAGACTGATGAGCGGTTTGGACTGGGAGACCGTCAGCAGGAATTCCCTCTCGGACGACCGACTGGAGACTCAGAGTCTGCCGAACCGCTCTCCGCCAGACTCGCCAGATCACAGTAACTCCGTGTTTACCACTGAGGGGGCGCGGATCAGGCCATCCTCCATTGGTCATTTGGTTGATCATGTGATCGATGACTCGCCATGCCAGACGTTCACCAATCACAAGTCGGCGTCCTCCACGCAGGCCAACAGCATCAGCTTGGACTCAACACCgtctcCTGATGTGACGACAGATGAACAGCCGCCGGCTTTGCCTCCCAAACAGTTCCGAAAAGATCCTCTAAACCACAACGGCAGATCTCAGTCTCAGCATGAGCTGGATGATCACGATCACCTCAGTGAATTATACAACGTCCCTGCAGCGTCGGGGAAGAGTAtgAATGGAGCCGTTCCTCATGACAATCTTGTTCTGATTAAAATGAGGCCGGATGAAAACGGGCGATTTGGATTTAACGTTAAGGGCGGCGTTGATCAGAGGATGCCCATCATCGTGTCTCGTGTGGCTCCAGGAACACCTGCTGATATGTGTGTGCCGCGGCTCAATGAAGGCGATCAGGTGGTGCTCATCAACGGCCGGGACATTTCAGACCACACGCACGACGACGTGGTTATGATAATCAAGGCCAGCTGCGAGGACCAATCAGGAGAGCTGATCCTACTCGTCAGACCCAATGCCATCTATGATGTGGACGAGGAGCAGGAGAAGCTGGATCTGGAGCCGGATTTCCAGTATATTCCCGAGGCGTGTGGTCTGGAGAGTCACTCAGAGGCCGACAGTCTCCGATCCTCCATTCAGCTGCTCCGAGACGGACTTGCGAGCGGCACCGTACCCGCACAGTTTGACcAATTGTACAGGAAGCGTCCCGGGATGTCCATGTCTTGTGCCAGATTGCCACAAAATGTCTCCAAAAACCGCTATCGGGACATTTCTCCATATGACAGCACTCGAGTCGTACTGAAGGGGACGGAGGATTATATCAATGCAAACTTCATCAATatggATGTGCCGAGTAAAGGGGAAGTGAGGCGGTATATTGCTTGTCAAGGGCCGCTTCCGGGCACCTGCTCAGACTTCTGGCAGATGGTGTGGGAACAGAGCGCCGCCCTCGTGGTCATGCTCACCACACAAGTTGAGCGGGGCCGGgTGAAATGTCATCAGTATTGGCCGAATGTTTCAGCGAGTGGCACATACGGAGGTTTTCAGGTTACGTGCGTGTCAGAGGAGGGAAACTCAGCGTATCTGCTCAGAGATCTGACTCTCACACACCTGGAGAGTAAAGAAGAAAGGCAGATATGTCAGATGCAGTACCTGGCGTGGCCTGATCATGGTGTGCCGGACGATTCCTCAGACTTTCTGAACTTCGTCAGCCAAGTGCGCAGCAAAAGAGCCGACGGTCCAGAACCTGTGGTGGTTCACTGCAGTGCTGGGATTGGCCGCACTGGGGTGCTGATCACAATGGAGACAGCGATGTGTTTAATAGAAGGCGGTCAGTCAGTGTATCCGCTGGACATCGTCAGAACCATGAGAGACCAGCGGGCCATGATGATCCAGACTCCGagCCAGTACCGCTTTGTTTGCGAAGCGATTCTTAAAGTTTACGATGAGGAGATTGTAAAACCATTCGAGACTGAGCTTCCGGTTGAAAAAGAAGAGTGATCACCAGACGCAGCGTTTCTGAGGCTTTTCTGCGATTTGCAACTACTGCCAGTGAGACCTGCACTCAGCTCGCTGTCGCCCCCCTGCTGGAAGGCAGTGGAAATGACCGCCTGCAAGCTAGAATACAGACGAAAAAGCACTATTGCACTTTACAGCGACAAACAATGACTtaaggggattttttttttttaagtatcagGTTACTGATTAATAGGTActgttaataatgttaattatttgGGTTAGAGAACAAAATTTGCTTTTCGCTTTTGTGCCAAAAGCTAAAATGAGCCACAGTCCATGTCAGATTTAACCAACTAACGACTGcatttgacattttattagttatttatttgtttcattttaacagCGGACGTAAAAGCAACGGGTGCTCGCCCCATTTCTCTTTCCTTTTCCTGACTGTGACTGTAATCACTTTAATGTTTACGTATCAAACACGTTTAAACTGTtaacgttgtttttttttattattgttaaacaaAGCAGTCAGCCAATAAAGGTTTTAACACATTACTTTGGCAATTTTTTGTAACGTACTTTCACCTTTTTGTAAAAGTAATTCCGTTATTTGTTATCGGATATGATTTTGACGGTACAACGGTTCTCatgtagtaaaataataaaaaaggccaCCAGCTATGTTAAAAATGAGCCATGGTGAAGATATTTCTCGCTGCCAATTTTCACAGCTGTTTGCCTCTAAAACCAATTGGCGAATAGCTATGGCTAATCGCTATTTATTAAACGGCTACATGTCGTACATAAAAACGCCTGACATTTGTATGGATAAATATGCATCAGGCAGCTGTTCTGCTCTCAGATCCACATTTGCCGAAACGTAGAAGCATTTTGTTTCGAAATTAAAGCTGTGAATTTAATTAAATGGCTACGAAGATATAAATTTAACATACGAATTAGCTTAGCATCCTTAtccataattaaaataaaaatatttttccaaGATTGTGATaaacaaaaatttatttaagttgCTCCCCCTTAATATGAATAATTTTGCGTTTTTCGTTGAGTTAAACAATCTGGTTCACTAAAAGTGGGCTAATCATTGGTTATGCTTATCCATGTCGCGTCTTAACTAGTTATCGGGTAGCTATTAACCGATAGCTAATAGCTATTAACCGGTAACGGCAATATACACATTAGGTGGTCATAGTTCATTAGTATTTGCTGTGGATGTAGAGACGATGGCATTTATGAACTCATTGGCCGATTTAACGTTCAATTCACAGAAAGACGAAGTTTAACAACTGCTAACGATCAATAAATTTAACACGTTTATTTTTGTTCGCGAATGTGATTTTTCCGCATCTGATAGGTATGAATTATGGAGCGAAATGGTTTTAATGTGACCTTAGTTGttatttttacaaacatttccCCCCTGTACAATGTTTTTGTGGTGCCATTGCGCAAACGATTTGGCGTCAAGGACCAATCCTGCCCACCGTTTTGAATGTGAGCCGATTTTGCTTCAGTGTACGTCGTTTTAGCGCAGCAGCTAGACATTTACTGCCGACATTGCGTCGGAAGTGGTGGTATTTTTGTATTCGATGAGAAAAAAAacgaacgaaaaaaaaaaaggacagcaCTTTGCAACTGACTGTGGTAGTCAGCTGTGCTACTGTAGAGTTTATACTGTAATTGTGTGATGGGGAAAAAAATATGCTGTTGAATTATTTATGTTGAACATTTTGTCAAATACGGACACCTATGGGGGGGCTCTTAACTACATAGTGTCATAtgtgaaatatttgtaaatacaatgttataTATTAAAAGTGTTCTGAAAAGATAACtgcttatttgtgttatttttaaagCGTAAATGGAagaaattgtatgtttttgtatatttaagtTTGTTGGTCTGTCTGTAAGAGAGCGGGTTTGTCTTTTGTACTCACTGTTTTATTTCCTACtgactttcatttttaaattgttcttcaacaagctttgtttttttgtattttagtagTTGTGACGAGCGTCAAATCAAATGTAATACAGCTCAAACTCAATTTCAGTGTTGTAAGTGACAAATATTGACTTGGAAGAATGAAAGaacaaatacatttgatttcgcAGCGTCTTTTTATTTGTCTTAGCTTTTCACATGAGGTGTTGAACAATGATAATTTAATCAGCTGTTTGGGGTAAAATTCATGACGACTTTGTGGATGTCATTTGGCACCATTTTTACTTCTTCATGACCTCGACGTCGACATTTTCTGTGCGAGAGACCCCTTTACCATCAACCACCTCTTCGATTACTGTGTGAACGCGCTTGGTCACAACAGGATCAGCTGGAGAGGACAAAAAAGTAAGTTAATTTATGTCACATTTATAAATTCTATTTTGGTGTTtgtaaaatttgcaaaaaaatacttaCGCTTGGGGGGGAGCTACAACCTCGACTACTTTGACAGTCTGTCTCCTGTAAACAAAAAAAGGGAAATAGTAGTTAAATATATGTGTACAATTCTacaatcatttgttttatttgtttgtaaaacTGATCTTACTGAATATCCTCTCCATCCAGAAGTCTCCTGTACTCTGCGATCTCCATCTCTAGTCTGGTCTTGATGTCCAGCAGCAGTTTGTATTCGCTGGCCTGTCTTTCGATGTCCATGCGCATCTGAGTGAGCTCCTGCTCCAGACTATTAATGACAGCCTGCAGTTGGTTGAGCTGAATGCTGTACCGTGACTCTGTCTCTCCCAGTGTGCCCTCCAGAGCTGATTTCTGTTCAGAGAAAATTGCAAGAAAGTTTTTCAGTCAGCAATACTAGGGCTGCCTATTAAATTTGAGAATTATATTAAATGATGCTCCCCCTAGTGGTAGaagaaattagttttttaattattattatttacataatgctaaGAACTTTTACCAGGCTAAGCTGTGACTGTAGTTCGATCTCCAGAGCCTGCAATGTTCTCCCGAGTTCGTTGATTTCATTACGTGACATTGAGAGGTCTTCTTGTTGGGTGGATACTTGCTTGTTTAGTTCGTCGAACTGTGAAGAAAGAGTTTGAGGTTAGCATTTAGCTGACTTTGTATGGTTTAGCCATTGATGTACTGTAGAAATACTTACTTTGCCCTTGTACCAGGCCTCCATTTCACGCTTGTTTTTCTCTGTGATGCCTTCATACTGCTGTCGCATCTCCTCCATGATGCGGGCCAGGTCTTGCTGAGGTGCAGCGTCAACCTCTACATTTACACTGCTGGAAGTCATTTGAGCGCGAAGAGCTGCAAGTTCCTACAGAACAACAATATATCTGTTAGCTTATGTGATGGTAGCTTATGGGGAATCATTTGTTCTGAAAACAttattgtcaaaataaaattGCTCAGTTGGAAGGTTGCTCCACTGAACGCTACTTGATTTTACTTGAAAATAAGTGAAATCTGTGTAAGGAACTTTTTAGCTGTCATCTGAAATTCCCAGTAGAACAGACTCCTTTTGCAATGACTGACTGGATTTTTTATTTCACACCTTTATACTTTGATGTTTCTACCAAGCAGGAGTCCACAAAACCACAATCATGGTCTAGTTcagttctcaaagtggg

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0016311 dephosphorylation biological_process
GO:0009898 cytoplasmic side of plasma membrane cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0016791 phosphatase activity molecular_function
GO:0004721 phosphoprotein phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6259 Predicted to enable protein tyrosine phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and cytoplasmic side of plasma membrane. Orthologous to human PTPN4 (protein tyrosine phosphatase non-receptor type 4).

Ensembl:

ensembl_id ENSDART00000000192

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042352 lncRNA downstream 79378 11697272 ~ 11698675 (-) True XLOC_020962
TCONS_00042351 lncRNA downstream 103632 11672189 ~ 11674421 (-) True XLOC_020961
TCONS_00041221 lncRNA downstream 163100 11606092 ~ 11614953 (-) False XLOC_020957
TCONS_00041222 lncRNA downstream 163100 11609430 ~ 11614953 (-) True XLOC_020957
TCONS_00042350 lncRNA downstream 673782 11102905 ~ 11104271 (-) True XLOC_020951
TCONS_00041248 lncRNA upstream 770984 12604318 ~ 12609544 (-) False XLOC_020970
TCONS_00042353 lncRNA upstream 770984 12604318 ~ 12611301 (-) False XLOC_020970
TCONS_00041254 lncRNA upstream 791152 12624486 ~ 12626063 (-) True XLOC_020970
TCONS_00041257 lncRNA upstream 865787 12699121 ~ 12700988 (-) False XLOC_020972
TCONS_00042354 lncRNA upstream 944555 12777889 ~ 12786441 (-) True XLOC_020975
TCONS_00041234 mRNA downstream 48703 11718780 ~ 11729350 (-) True XLOC_020964
TCONS_00041233 mRNA downstream 53490 11717429 ~ 11724563 (-) False XLOC_020964
TCONS_00041232 mRNA downstream 53490 11717429 ~ 11724563 (-) False XLOC_020964
TCONS_00041229 mRNA downstream 63895 11710467 ~ 11714158 (-) False XLOC_020963
TCONS_00041230 mRNA downstream 63947 11710514 ~ 11714106 (-) False XLOC_020963
TCONS_00041238 mRNA upstream 65327 11898661 ~ 11955907 (-) False XLOC_020966
TCONS_00041239 mRNA upstream 65518 11898852 ~ 11954861 (-) True XLOC_020966
TCONS_00041240 mRNA upstream 261150 12094484 ~ 12160283 (-) False XLOC_020967
TCONS_00041241 mRNA upstream 261540 12094874 ~ 12161095 (-) False XLOC_020967
TCONS_00041242 mRNA upstream 267091 12100425 ~ 12160298 (-) True XLOC_020967
TCONS_00041199 other downstream 1014006 10763933 ~ 10764047 (-) True XLOC_020940
TCONS_00041196 other downstream 1110079 10667858 ~ 10667974 (-) True XLOC_020936
TCONS_00041173 other downstream 1619947 10156402 ~ 10158106 (-) True XLOC_020918
TCONS_00041160 other downstream 1698384 10076578 ~ 10079669 (-) False XLOC_020914
TCONS_00041139 other downstream 1951584 9824521 ~ 9826469 (-) True XLOC_020903
TCONS_00041246 other upstream 751505 12584839 ~ 12584954 (-) True XLOC_020969
TCONS_00041251 other upstream 773999 12607333 ~ 12611301 (-) False XLOC_020970
TCONS_00041252 other upstream 783815 12617149 ~ 12626105 (-) False XLOC_020970
TCONS_00041253 other upstream 790932 12624266 ~ 12626079 (-) False XLOC_020970
TCONS_00041266 other upstream 1100151 12933485 ~ 12934589 (-) False XLOC_020979

Expression Profile

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