RNA id: TU1283653


Basic Information

Item Value
RNA id TU1283653
length 511
lncRNA type intronic
GC content 0.43
exon number 2
gene id G1128456
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 94255133 ~ 94255853 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAATACAGTACTGTTACAGCCTGGGACAATCTGCTCTCTACCCTTTCCTCTGGGTTTGCAGAAGGGTCTGAGCTTCCACCATATTGATTACACCCTTACAGATCAGAGCTTCCACCATATTGCTAACACCTTACGGATCAGAGTTTCCACCATACTGCTAACACCTTACAGATCAGAGTTTCCACCATACTGCTAACACCTTACAGATCAGAGTTTCCACCATACTGCTAACACCTTACAGATCAGAGTTTCCACCATACTGCTAACACCTTACAGATCAGAGTTTCCACCATACTGCTAACACCTTACAGATCAGAGCTTCCACCATACTGCTAACACCTTACAGATCAGAGTTTCCACCATACTGCTAACAGACATAGAAGGAGAAGTGGATGAGAGCAAGTTGTGACAGGTTATTGTACAGAGACATACATTACAAACATAGgtttgtgtgtcccaaatggcatcctatattCATAtctactgcactacttttgaccatattcccta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1283642 lncRNA upstream 27150 94226986 ~ 94227983 (+) True G1128446
TU1283619 lncRNA upstream 67060 94185561 ~ 94188073 (+) True G1128431
TU1283601 lncRNA upstream 102267 94152647 ~ 94152866 (+) True G1128420
TU1283597 lncRNA upstream 114280 94140647 ~ 94140853 (+) True G1128416
TU1283492 lncRNA upstream 124218 94128716 ~ 94130915 (+) True LOC118937790
TU1283656 lncRNA downstream 1991 94257844 ~ 94258444 (+) True G1128457
TU1283658 lncRNA downstream 2946 94258799 ~ 94261438 (+) True G1128458
TU1283629 lncRNA downstream 18593 94274446 ~ 94282403 (+) False LOC118937792
TU1283630 lncRNA downstream 18593 94274446 ~ 94282403 (+) True LOC118937792
TU1284164 lncRNA downstream 28130 94283983 ~ 94284323 (+) True G1128852
XM_036939266.1 mRNA upstream 124220 94124352 ~ 94130913 (+) False LOC118937790
XM_036939240.1 mRNA upstream 139090 94065500 ~ 94116043 (+) False LOC110485300
XM_036939556.1 mRNA upstream 218218 94023721 ~ 94036915 (+) True LOC110515058
XM_036939263.1 mRNA upstream 247897 94005245 ~ 94007236 (+) True LOC110519288
XM_036939244.1 mRNA upstream 259792 93991609 ~ 93995341 (+) True LOC110516968
XR_005035218.1 mRNA downstream 28027 94283880 ~ 94312341 (+) False LOC110487474
XM_036939300.1 mRNA downstream 36581 94292434 ~ 94301428 (+) True LOC110487157
XR_005035219.1 mRNA downstream 50401 94306254 ~ 94312341 (+) False LOC110487474
XR_005035220.1 mRNA downstream 50401 94306254 ~ 94312341 (+) False LOC110487474
XM_036939302.1 mRNA downstream 50401 94306254 ~ 94327815 (+) False LOC110487474
TU1283489 other upstream 170963 94065687 ~ 94084170 (+) True LOC110485300
TU1283478 other upstream 171334 94065687 ~ 94083799 (+) False LOC110485300
TU1283472 other upstream 412036 93842769 ~ 93843097 (+) True G1128318
TU1283325 other upstream 653008 93593010 ~ 93602125 (+) False LOC110534257
TU1283301 other upstream 798173 93455845 ~ 93456960 (+) True G1128189
TU1284420 other downstream 481916 94737769 ~ 94833934 (+) False G1129047
TU1284417 other downstream 575576 94831429 ~ 94833934 (+) True G1129047
TU1285088 other downstream 938533 95194386 ~ 95195280 (+) True G1129576
TU1285100 other downstream 956451 95212304 ~ 95224183 (+) True LOC110516622
TU1285103 other downstream 996567 95252420 ~ 95253323 (+) True G1129591

Expression Profile