RNA id: TU1284477



Basic Information


Item Value
RNA id TU1284477
length 313
lncRNA type intronic
GC content 0.46
exon number 2
gene id G1129092
representative True

Chromosome Information


Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 94284953 ~ 94285538 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTGTTAGATGCAGCAAAAGAGTTCCCGCATTGAGGGCAGCGGTATGGTTTCCCTCAGGTGTGATTCCGCTGGTGAATTAAGGACCTTTGTGTAGTGAACCGCTTCCCAAAGTCAGAGCAGTAGTGGTGAGGTTTATTCCCTGTACGTCTCTGCTGGGGTTTCTTGAGATGTTCTGATCGGGTGAGATTATTCTCTGTCTCGTCAGCATCATGATGTTTTTGAGGCCCCCCAGATGATAAGTCCCCCTACTGAGAGAAACAAAGACATTGAATAACTAGGTTTTGGAAATATGGGTCCCTAAACAAATATTatc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1284036 lncRNA downstream 2819 94277562 ~ 94282382 (-) True G1128760
TU1284120 lncRNA downstream 12634 94268818 ~ 94272567 (-) False G1128821
TU1284121 lncRNA downstream 12634 94268818 ~ 94272567 (-) True G1128821
TU1284103 lncRNA downstream 43293 94240010 ~ 94241908 (-) True G1128806
TU1284072 lncRNA downstream 129284 94155689 ~ 94155917 (-) True G1128789
TU1284531 lncRNA upstream 62270 94347808 ~ 94355963 (-) True G1129143
TU1284495 lncRNA upstream 65110 94350648 ~ 94393040 (-) True G1129108
TU1284511 lncRNA upstream 74669 94360207 ~ 94360925 (-) True LOC110513422
TU1284505 lncRNA upstream 107649 94393187 ~ 94400986 (-) True LOC110513423
TU1284541 lncRNA upstream 128477 94414015 ~ 94415548 (-) True G1129152
XM_036939268.1 mRNA downstream 94224 94179962 ~ 94190977 (-) False LOC110487111
XR_005035217.1 mRNA downstream 97052 94185475 ~ 94188149 (-) True LOC118937791
XM_036939267.1 mRNA downstream 100735 94179962 ~ 94184466 (-) False LOC110487111
XM_021586983.2 mRNA downstream 146539 94135129 ~ 94138662 (-) True LOC110507112
XM_036939264.1 mRNA downstream 312058 93944638 ~ 93973143 (-) True LOC110514005
XM_036939277.1 mRNA upstream 64204 94349742 ~ 94357254 (-) True LOC118937795
LOC110513422 mRNA upstream 74801 94360339 ~ 94369276 (-) False LOC110513422
XM_036939273.1 mRNA upstream 85300 94370838 ~ 94376950 (-) False LOC110513417
XM_036939275.1 mRNA upstream 85300 94370838 ~ 94376966 (-) False LOC110513417
XM_036939276.1 mRNA upstream 85300 94370838 ~ 94376966 (-) False LOC110513417
TU1284122 other downstream 10019 94274562 ~ 94275182 (-) True G1128822
TU1284112 other downstream 32813 94251001 ~ 94252388 (-) True G1128814
TU1284032 other downstream 103604 94180008 ~ 94181597 (-) True LOC110487111
TU1284000 other downstream 169017 94006578 ~ 94116184 (-) True G1128731
TU1283832 other downstream 559860 93721846 ~ 93725341 (-) True p-ras
TU1284503 other upstream 166077 94451615 ~ 94458198 (-) True LOC110511881
TU1285045 other upstream 807084 95092622 ~ 95093093 (-) True G1129544
TU1285529 other upstream 1106663 95392201 ~ 95393967 (-) True G1129951
TU1285638 other upstream 1340220 95625758 ~ 95626165 (-) True G1130049
TU1285748 other upstream 1559569 95845107 ~ 95846283 (-) False G1130145

Expression Profile