RNA id: TU1284166


Basic Information

Item Value
RNA id TU1284166
length 266
lncRNA type read_through
GC content 0.47
exon number 2
gene id G1128854
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 94297504 ~ 94297803 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCTGATATCTCTTTTGGCATCGTGCAGGGCTCCTGTTTGGTTGGCGACGTGGTGTCTGGCCGGttctgggagggggccagagacaattacttgatgccAACACATCTTTTTAGCTAAGTTACACGCTGAAGTTATGTTACACTTGGTAACCAGACTGTTTCATCCCAACATCGTTGATGCCTAGCTCCATATTCAGATGAGCCTTTACGTCGGTAGCCCTGAAAAAAATAATTATCCAACGATCATACATTGTTCACCAGGGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1284165 lncRNA upstream 6124 94290382 ~ 94291380 (+) True G1128853
TU1284164 lncRNA upstream 13181 94283983 ~ 94284323 (+) True G1128852
TU1283629 lncRNA upstream 15101 94274446 ~ 94282403 (+) False LOC118937792
TU1283630 lncRNA upstream 15101 94274446 ~ 94282403 (+) True LOC118937792
TU1283658 lncRNA upstream 36066 94258799 ~ 94261438 (+) True G1128458
TU1284142 lncRNA downstream 7458 94305261 ~ 94305984 (+) True G1128832
TU1284131 lncRNA downstream 11267 94309070 ~ 94312784 (+) True G1128827
TU1284140 lncRNA downstream 27913 94325716 ~ 94327712 (+) True LOC110487474
TU1284184 lncRNA downstream 51072 94348875 ~ 94357443 (+) True G1128870
TU1284187 lncRNA downstream 93530 94391333 ~ 94451663 (+) True G1128873
XM_036939269.1 mRNA upstream 19419 94204536 ~ 94278085 (+) False LOC118937792
XM_036939270.1 mRNA upstream 19419 94251501 ~ 94278085 (+) False LOC118937792
XM_036939266.1 mRNA upstream 166591 94124352 ~ 94130913 (+) False LOC118937790
XM_036939240.1 mRNA upstream 181461 94065500 ~ 94116043 (+) False LOC110485300
XM_036939556.1 mRNA upstream 260589 94023721 ~ 94036915 (+) True LOC110515058
XR_005035219.1 mRNA downstream 8451 94306254 ~ 94312341 (+) False LOC110487474
XR_005035220.1 mRNA downstream 8451 94306254 ~ 94312341 (+) False LOC110487474
XM_036939302.1 mRNA downstream 8451 94306254 ~ 94327815 (+) False LOC110487474
XM_036939303.1 mRNA downstream 8451 94306254 ~ 94327815 (+) False LOC110487474
XM_036939304.1 mRNA downstream 8466 94306269 ~ 94313060 (+) False LOC110487474
TU1283489 other upstream 213334 94065687 ~ 94084170 (+) True LOC110485300
TU1283478 other upstream 213705 94065687 ~ 94083799 (+) False LOC110485300
TU1283472 other upstream 454407 93842769 ~ 93843097 (+) True G1128318
TU1283325 other upstream 695379 93593010 ~ 93602125 (+) False LOC110534257
TU1283301 other upstream 840544 93455845 ~ 93456960 (+) True G1128189
TU1284420 other downstream 439966 94737769 ~ 94833934 (+) False G1129047
TU1284417 other downstream 533626 94831429 ~ 94833934 (+) True G1129047
TU1285088 other downstream 896583 95194386 ~ 95195280 (+) True G1129576
TU1285100 other downstream 914501 95212304 ~ 95224183 (+) True LOC110516622
TU1285103 other downstream 954617 95252420 ~ 95253323 (+) True G1129591

Expression Profile