RNA id: TCONS_00041246


Basic Information

Item Value
RNA id TCONS_00041246
length 116
RNA type rRNA
GC content 0.56
exon number 1
gene id XLOC_020969
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 12584839 ~ 12584954 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gccacagccatatcaccctgcagcccaagaccgggtACTCACTgatgctaagcagggctgagcctggtcagtacctggatgggaaaccacgtgggaaaactagattgctggtggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000177142

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042352 lncRNA downstream 886164 11697272 ~ 11698675 (-) True XLOC_020962
TCONS_00042351 lncRNA downstream 910418 11672189 ~ 11674421 (-) True XLOC_020961
TCONS_00041221 lncRNA downstream 969886 11606092 ~ 11614953 (-) False XLOC_020957
TCONS_00041222 lncRNA downstream 969886 11609430 ~ 11614953 (-) True XLOC_020957
TCONS_00042350 lncRNA downstream 1480568 11102905 ~ 11104271 (-) True XLOC_020951
TCONS_00041248 lncRNA upstream 19364 12604318 ~ 12609544 (-) False XLOC_020970
TCONS_00042353 lncRNA upstream 19364 12604318 ~ 12611301 (-) False XLOC_020970
TCONS_00041254 lncRNA upstream 39532 12624486 ~ 12626063 (-) True XLOC_020970
TCONS_00041257 lncRNA upstream 114167 12699121 ~ 12700988 (-) False XLOC_020972
TCONS_00042354 lncRNA upstream 192935 12777889 ~ 12786441 (-) True XLOC_020975
TCONS_00041244 mRNA downstream 247058 12217920 ~ 12337781 (-) False XLOC_020968
TCONS_00041243 mRNA downstream 247058 12217920 ~ 12337781 (-) False XLOC_020968
TCONS_00041245 mRNA downstream 280248 12280456 ~ 12304591 (-) True XLOC_020968
TCONS_00041241 mRNA downstream 423744 12094874 ~ 12161095 (-) False XLOC_020967
TCONS_00041242 mRNA downstream 424541 12100425 ~ 12160298 (-) True XLOC_020967
TCONS_00041247 mRNA upstream 19348 12604302 ~ 12626105 (-) False XLOC_020970
TCONS_00041250 mRNA upstream 19463 12604417 ~ 12626207 (-) False XLOC_020970
TCONS_00041249 mRNA upstream 19463 12604417 ~ 12626207 (-) False XLOC_020970
TCONS_00041255 mRNA upstream 56626 12641580 ~ 12693833 (-) False XLOC_020971
TCONS_00041256 mRNA upstream 56626 12641580 ~ 12693837 (-) True XLOC_020971
TCONS_00041199 other downstream 1820792 10763933 ~ 10764047 (-) True XLOC_020940
TCONS_00041196 other downstream 1916865 10667858 ~ 10667974 (-) True XLOC_020936
TCONS_00041173 other downstream 2426733 10156402 ~ 10158106 (-) True XLOC_020918
TCONS_00041160 other downstream 2505170 10076578 ~ 10079669 (-) False XLOC_020914
TCONS_00041139 other downstream 2758370 9824521 ~ 9826469 (-) True XLOC_020903
TCONS_00041251 other upstream 22379 12607333 ~ 12611301 (-) False XLOC_020970
TCONS_00041252 other upstream 32195 12617149 ~ 12626105 (-) False XLOC_020970
TCONS_00041253 other upstream 39312 12624266 ~ 12626079 (-) False XLOC_020970
TCONS_00041266 other upstream 348531 12933485 ~ 12934589 (-) False XLOC_020979
TCONS_00041270 other upstream 516782 13101736 ~ 13112322 (-) True XLOC_020984