RNA id: TCONS_00042353


Basic Information

Item Value
RNA id TCONS_00042353
length 740
lncRNA type read_through
GC content 0.47
exon number 6
gene id XLOC_020970
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 12604302 ~ 12626207 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTTTGACATGATTGTTCCTTCTCTGGAGGTCTGGAGCCAACAACTGACCTCTCTGTCAGATCTACATCATGCCCTAATCAATCTACAGAAGAGGTTGTTGCCTTTACAGCCAGAAAGTGGCTCAACCGCACTTTCAGATTCAGTACGAGTTGAAGACCTGATGCTGATCGTCGACACACTCCTGGATGAAACCCAACCAGATGATAAGGTGCCACTTTCAGCTTTCTGCaccaagGTTTTGCGCAGTCCCACCAGACACACATTGGAGTCTATAGTCGCACACTTCCAGAAACTCTTCGATGTGCCGTCGCTGACAGGAATCTACCCTCGCATGACTGAGCTCTACAGCAAACTAGGGGAGATGAACAACGCCATGAGGAACCTTCGAGACCTCCTGGACTTGGatgATAAAGCTCCTGCTAGTGAGGTGGTCAGCAGCGTCTCCAGTGTCCTGTCTCAGTCTGGACAGGAGATCTGCAGCCTTCTGGAAAGCAGCGACATTGACAGCATCATCCTGAAGCTGAAGGAACATGAGGAGTTTTTCCCCGCTTTCCACTCGTTCATGCTGGAGCTTCTGCAAACTCTGGACGTCCAAACTCTAGACGACGTTTTACCAAGAATCCGTTCTCTCAAAGGCTGATGTTTGTAAAGCACCGTGTGGTTTTAGACctgactatttatttaaaaactacttGATTCTCAgtgtttgtattttataaataaatctgtgCCGACAGCA

Function

GO:

id name namespace
GO:0070507 regulation of microtubule cytoskeleton organization biological_process
GO:0060271 cilium assembly biological_process
GO:0060287 epithelial cilium movement involved in determination of left/right asymmetry biological_process
GO:0005813 centrosome cellular_component
GO:0043015 gamma-tubulin binding molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042352 lncRNA downstream 905643 11697272 ~ 11698675 (-) True XLOC_020962
TCONS_00042351 lncRNA downstream 929897 11672189 ~ 11674421 (-) True XLOC_020961
TCONS_00041221 lncRNA downstream 989365 11606092 ~ 11614953 (-) False XLOC_020957
TCONS_00041222 lncRNA downstream 989365 11609430 ~ 11614953 (-) True XLOC_020957
TCONS_00042350 lncRNA downstream 1500047 11102905 ~ 11104271 (-) True XLOC_020951
TCONS_00041254 lncRNA upstream 13185 12624486 ~ 12626063 (-) True XLOC_020970
TCONS_00041257 lncRNA upstream 87820 12699121 ~ 12700988 (-) False XLOC_020972
TCONS_00042354 lncRNA upstream 166588 12777889 ~ 12786441 (-) True XLOC_020975
TCONS_00041942 lncRNA upstream 321989 12933290 ~ 12934717 (-) False XLOC_020979
TCONS_00041267 lncRNA upstream 322259 12933560 ~ 12940709 (-) True XLOC_020979
TCONS_00041244 mRNA downstream 266537 12217920 ~ 12337781 (-) False XLOC_020968
TCONS_00041243 mRNA downstream 266537 12217920 ~ 12337781 (-) False XLOC_020968
TCONS_00041245 mRNA downstream 299727 12280456 ~ 12304591 (-) True XLOC_020968
TCONS_00041241 mRNA downstream 443223 12094874 ~ 12161095 (-) False XLOC_020967
TCONS_00041242 mRNA downstream 444020 12100425 ~ 12160298 (-) True XLOC_020967
TCONS_00041255 mRNA upstream 30279 12641580 ~ 12693833 (-) False XLOC_020971
TCONS_00041256 mRNA upstream 30279 12641580 ~ 12693837 (-) True XLOC_020971
TCONS_00041258 mRNA upstream 87820 12699121 ~ 12726556 (-) True XLOC_020972
TCONS_00041259 mRNA upstream 118028 12729329 ~ 12746539 (-) False XLOC_020973
TCONS_00041260 mRNA upstream 119737 12731038 ~ 12745589 (-) True XLOC_020973
TCONS_00041246 other downstream 19364 12584839 ~ 12584954 (-) True XLOC_020969
TCONS_00041199 other downstream 1840271 10763933 ~ 10764047 (-) True XLOC_020940
TCONS_00041196 other downstream 1936344 10667858 ~ 10667974 (-) True XLOC_020936
TCONS_00041173 other downstream 2446212 10156402 ~ 10158106 (-) True XLOC_020918
TCONS_00041160 other downstream 2524649 10076578 ~ 10079669 (-) False XLOC_020914
TCONS_00041252 other upstream 5848 12617149 ~ 12626105 (-) False XLOC_020970
TCONS_00041253 other upstream 12965 12624266 ~ 12626079 (-) False XLOC_020970
TCONS_00041266 other upstream 322184 12933485 ~ 12934589 (-) False XLOC_020979
TCONS_00041270 other upstream 490435 13101736 ~ 13112322 (-) True XLOC_020984
TCONS_00041280 other upstream 1100133 13711434 ~ 13716397 (-) False XLOC_020993

Expression Profile

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