RNA id: TU1285614



Basic Information


Item Value
RNA id TU1285614
length 247
lncRNA type intronic
GC content 0.44
exon number 1
gene id G1130031
representative True

Chromosome Information


Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 95590713 ~ 95590959 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTCACATATACAGTGGAATGGGCCATTTGGTTATCATGGTAACTGCTCTCCTGTGCCATGTTGTTGTGTCTGTGCCGATAGGGAGCAAATCCATGTACATAACAGTACTTACCTAGCAAATCCTAACCAATAGGATGAATGAATATAGGATGAAGCTACTATATCACGGTGAGTTTACCAGCCTTACCCTTTGACCCCTCCTGATTCACAGGGCAGTCGGCCCATTTTATCTTATCTGATTCAGTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1285613 lncRNA downstream 10 95590429 ~ 95590703 (-) True G1130030
TU1285612 lncRNA downstream 1039 95589273 ~ 95589674 (-) True G1130029
TU1285610 lncRNA downstream 13134 95577284 ~ 95577579 (-) True G1130027
TU1285607 lncRNA downstream 19587 95570793 ~ 95571126 (-) True G1130024
TU1285605 lncRNA downstream 22225 95568270 ~ 95568488 (-) True G1130022
TU1285631 lncRNA upstream 16651 95607610 ~ 95610732 (-) True G1130042
TU1285643 lncRNA upstream 43428 95634387 ~ 95634704 (-) True G1130054
TU1285647 lncRNA upstream 52146 95643105 ~ 95643307 (-) True G1130058
TU1285648 lncRNA upstream 52772 95643731 ~ 95644013 (-) True G1130059
TU1285664 lncRNA upstream 82936 95673895 ~ 95674153 (-) True G1130074
XM_036939338.1 mRNA downstream 202232 95380385 ~ 95388481 (-) True LOC118937798
XM_021625727.2 mRNA downstream 280950 95300960 ~ 95309763 (-) True LOC110538756
XM_021625726.2 mRNA downstream 280953 95300960 ~ 95309760 (-) False LOC110538756
XM_036939332.1 mRNA downstream 294605 95287208 ~ 95296108 (-) True LOC118936310
XM_036939330.1 mRNA downstream 312619 95269361 ~ 95278094 (-) True LOC110538752
XR_002475813.2 mRNA upstream 404286 95995245 ~ 95996642 (-) False LOC110538778
XR_005035332.1 mRNA upstream 404430 95995389 ~ 95995530 (-) True LOC118937923
XR_005035246.1 mRNA upstream 714909 96305868 ~ 96313005 (-) False LOC118937801
XM_036939367.1 mRNA upstream 723367 96314326 ~ 96341124 (-) False LOC118937802
XM_036939366.1 mRNA upstream 723367 96314326 ~ 96365986 (-) True LOC118937802
TU1285529 other downstream 196746 95392201 ~ 95393967 (-) True G1129951
TU1285045 other downstream 497620 95092622 ~ 95093093 (-) True G1129544
TU1284503 other downstream 1132515 94451615 ~ 94458198 (-) True LOC110511881
TU1284122 other downstream 1315531 94274562 ~ 94275182 (-) True G1128822
TU1284112 other downstream 1338325 94251001 ~ 94252388 (-) True G1128814
TU1285638 other upstream 34799 95625758 ~ 95626165 (-) True G1130049
TU1285748 other upstream 254148 95845107 ~ 95846283 (-) False G1130145
TU1286238 other upstream 801440 96392399 ~ 96435350 (-) True LOC110516715
TU1286832 other upstream 1111448 96702407 ~ 96705588 (-) True G1130893
TU1286846 other upstream 1123832 96714791 ~ 96715635 (-) True LOC110518479

Expression Profile