RNA id: TU1285500


Basic Information

Item Value
RNA id TU1285500
length 414
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G1129929
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 95819336 ~ 95819749 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctttctccctctctgtacctctctctctctctctttctcttttctttctctgtaccgatatctgtctgtctccatctctctcttcctccctcctccctttctctgtctagAACACTGTCTGACCCATTGTCTTACCCTCCAGCAATACACTTGGTATGAACTTAAAATGTACCTCAAAACGCTTATCATATATTTATAGACACACCCCATCACCACATTTTATCAGCCCAGGCAGTCTACAACTAGGCATGGCTAGTACATATTTTAAAGGAGTCATTCATTTGTGTAGTAATGTTATGAAATACATTAGCTAGAATGATACTGAATATGAGCGTATAGGTATAAAAGTCTACGCCTAGTATGAGATTTTAAACTAAAGCCTTGGTGGCATGTCCCTTCTCAACCCTCAGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1285394 lncRNA upstream 196731 95593013 ~ 95622605 (+) True G1129827
TU1285396 lncRNA upstream 222564 95596331 ~ 95596772 (+) True G1129829
TU1285381 lncRNA upstream 242485 95576651 ~ 95576851 (+) True G1129815
TU1285380 lncRNA upstream 242794 95576216 ~ 95576542 (+) True G1129814
TU1285376 lncRNA upstream 247172 95571917 ~ 95572164 (+) True G1129810
TU1285502 lncRNA downstream 10248 95829997 ~ 95863829 (+) True G1129931
TU1285519 lncRNA downstream 49797 95869546 ~ 95869821 (+) True G1129943
TU1285521 lncRNA downstream 50755 95870504 ~ 95870801 (+) True G1129945
TU1285778 lncRNA downstream 108003 95927752 ~ 95928365 (+) True G1130168
TU1285780 lncRNA downstream 109460 95929209 ~ 95929685 (+) True G1130170
XM_036939340.1 mRNA upstream 4109 95629494 ~ 95815227 (+) False LOC110538761
XM_036939342.1 mRNA upstream 4109 95629494 ~ 95815227 (+) False LOC110538761
XM_036939341.1 mRNA upstream 4109 95629673 ~ 95815227 (+) False LOC110538761
XR_005035234.1 mRNA upstream 201175 95612942 ~ 95618161 (+) True LOC110538762
XR_005035235.1 mRNA upstream 201177 95612934 ~ 95618159 (+) False LOC110538762
XM_036939346.1 mRNA downstream 4133 95823882 ~ 95841257 (+) False LOC110486806
XM_036939347.1 mRNA downstream 4133 95823882 ~ 95841258 (+) False LOC110486806
XM_036939345.1 mRNA downstream 4149 95823898 ~ 95848439 (+) False LOC110486806
XM_036939343.1 mRNA downstream 4150 95823899 ~ 95848439 (+) True LOC110486806
XM_036939348.1 mRNA downstream 135206 95954955 ~ 95994774 (+) False LOC110539033
TU1285388 other upstream 188761 95629603 ~ 95630575 (+) True LOC110538761
TU1285338 other upstream 299694 95519178 ~ 95519642 (+) True G1129772
TU1285157 other upstream 509639 95300784 ~ 95309697 (+) True G1129613
TU1285124 other upstream 552280 95266518 ~ 95267056 (+) True G1129601
TU1285103 other upstream 566013 95252420 ~ 95253323 (+) True G1129591
TU1286334 other downstream 798507 96618256 ~ 96623345 (+) False G1130570
TU1286335 other downstream 801640 96621389 ~ 96623345 (+) False G1130570
TU1286333 other downstream 810817 96630566 ~ 96633452 (+) False G1130570
TU1286336 other downstream 810817 96630566 ~ 96633452 (+) False G1130570
TU1286341 other downstream 810817 96630566 ~ 96633452 (+) True G1130570

Expression Profile