RNA id: TCONS_00041258


Basic Information

Item Value
RNA id TCONS_00041258
length 1127
RNA type mRNA
GC content 0.43
exon number 6
gene id XLOC_020972
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 12699121 ~ 12726556 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACGATGTTAAATGTAACACCAAACAAATTTGTCAATTTTAACACGTGCGGGACGATTTCTGAATGTCTGGGCTTTGTGTAAGCTCAAGGATATCAACGAAACGCACATACTAAAACAAAATGGTTGGGAAAATCAAACGGATTCGGCAGAAGCTCCATCATGGTGCAGTGAAGCTGGAAAATGCGCCCGAAAACAGACCCACGCTGGAGAGTCTGGAGAAGATACAGATCCAGTCCTTTCAGCGAGCAAAAACAGACGCAAAACAGCCCAAAAGCAGCATATCTGACACCAGCAATAACAATAACACAAAGGCGATCAGCTTTCCCTCTTCAGTTTTTGCTGGAACTAAAATCTCCCCCGAGTCTTTAGTACAAACGCTGAAGGTCGATGAAGAACAATCAAACGCGACTGTAAACAAACGAGGAGAACTTAAAGGCACAGTAGAAAAGAAACAACAATcgaagaaagaaaaaatgaaggAGCGAAGAGAACGATGGCTCAACAAGATCAGTGTGATAAAGCAGGATCGTGAGCAGCAAGCGGCTGCAGTGCGCAGGAGAGCCACACCGGTGGTGGGCGACATGAGACCTCTGGCAGACGCTCTTCCTGAACTCCAGCAGCTCCTTCCATCAGCGCAGAGCCAGAGGAGGAGGAGCAGAAACACAGCTTTGGTTAAGAAGAAAGCAGAAACCACAGACTTCGCCAGGATGAAACCGGCACAGAAACGAAAACATCTTGAAACGGAAGTGTCTTTCTTCAGCGAAGCCTTGAAAAATCCCTCCTTCAAGATCAACCCTTTAGCTGCGATCGGTGATCATCTGCGAAAACGACTCAAACAGGAAGACGAACAGAGTTAATCACAACTTCTGGTAGACTACAGGAACTACAACTTCTTAAATACACTCATTTGGTGAAATGAAATAAGACAGTTTTGTAGTACATAAAATGATTAGAatgcaaagaagaaaaaaaagcataatctGCATTATCTGTCACATCATCAAAGCACAGAGAACAGTTAATTGCAGTTTCCTAATTTTATAAACGAGCGATCAGGTTATGTGATATTTAATGACTGTATTCAGTTTGTCTGTTTCGGGCTATAAATAAATCTGTTAGAAAAGTA

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016071 mRNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0030490 maturation of SSU-rRNA biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0030684 preribosome cellular_component
GO:0030686 90S preribosome cellular_component
GO:0030687 preribosome, large subunit precursor cellular_component
GO:0032040 small-subunit processome cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044452 obsolete nucleolar part cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060825-113 Predicted to act upstream of or within maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to be located in nucleolus. Predicted to be part of 90S preribosome and preribosome, small subunit precursor. Orthologous to human SLX9 (SLX9 ribosome biogenesis factor).

Ensembl:

ensembl_id ENSDART00000105776

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00041254 lncRNA downstream 73058 12624486 ~ 12626063 (-) True XLOC_020970
TCONS_00042353 lncRNA downstream 87820 12604318 ~ 12611301 (-) False XLOC_020970
TCONS_00041248 lncRNA downstream 89577 12604318 ~ 12609544 (-) False XLOC_020970
TCONS_00042352 lncRNA downstream 1000446 11697272 ~ 11698675 (-) True XLOC_020962
TCONS_00042351 lncRNA downstream 1024700 11672189 ~ 11674421 (-) True XLOC_020961
TCONS_00042354 lncRNA upstream 51333 12777889 ~ 12786441 (-) True XLOC_020975
TCONS_00041942 lncRNA upstream 206734 12933290 ~ 12934717 (-) False XLOC_020979
TCONS_00041267 lncRNA upstream 207004 12933560 ~ 12940709 (-) True XLOC_020979
TCONS_00042355 lncRNA upstream 223264 12949820 ~ 12950292 (-) True XLOC_020980
TCONS_00042356 lncRNA upstream 231666 12958222 ~ 12964877 (-) True XLOC_020981
TCONS_00041256 mRNA downstream 5284 12641580 ~ 12693837 (-) True XLOC_020971
TCONS_00041255 mRNA downstream 5288 12641580 ~ 12693833 (-) False XLOC_020971
TCONS_00041250 mRNA downstream 72914 12604417 ~ 12626207 (-) False XLOC_020970
TCONS_00041249 mRNA downstream 72914 12604417 ~ 12626207 (-) False XLOC_020970
TCONS_00041247 mRNA downstream 73016 12604302 ~ 12626105 (-) False XLOC_020970
TCONS_00041259 mRNA upstream 2773 12729329 ~ 12746539 (-) False XLOC_020973
TCONS_00041260 mRNA upstream 4482 12731038 ~ 12745589 (-) True XLOC_020973
TCONS_00041261 mRNA upstream 25730 12752286 ~ 12763350 (-) True XLOC_020974
TCONS_00041262 mRNA upstream 105119 12831675 ~ 12862415 (-) False XLOC_020976
TCONS_00041263 mRNA upstream 120393 12846949 ~ 12862415 (-) True XLOC_020976
TCONS_00041252 other downstream 73016 12617149 ~ 12626105 (-) False XLOC_020970
TCONS_00041253 other downstream 73042 12624266 ~ 12626079 (-) False XLOC_020970
TCONS_00041251 other downstream 87820 12607333 ~ 12611301 (-) False XLOC_020970
TCONS_00041246 other downstream 114167 12584839 ~ 12584954 (-) True XLOC_020969
TCONS_00041199 other downstream 1935074 10763933 ~ 10764047 (-) True XLOC_020940
TCONS_00041266 other upstream 206929 12933485 ~ 12934589 (-) False XLOC_020979
TCONS_00041270 other upstream 375180 13101736 ~ 13112322 (-) True XLOC_020984
TCONS_00041280 other upstream 984878 13711434 ~ 13716397 (-) False XLOC_020993
TCONS_00041282 other upstream 984878 13711434 ~ 13716585 (-) False XLOC_020993
TCONS_00041281 other upstream 984878 13711434 ~ 13716585 (-) False XLOC_020993

Expression Profile

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