RNA id: TCONS_00041260



Basic Information


Item Value
RNA id TCONS_00041260
length 2231
RNA type mRNA
GC content 0.47
exon number 14
gene id XLOC_020973
representative True

Chromosome Information


Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 12729329 ~ 12746539 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


GTATCCAGGCTGATGATGACCTGAAGTCCATGATTGTTGGCACAGTGATGAGAAAAATCAAGTCTCGCACATGGAAAAAGCAGCGTTACTTCAGGCTACAAGAagactgcatgactatctggtaCCAGAGCAAGAAAGCAGGAAATGCCCACTCCACCTtTTCTGTGGGTGATGTTGAGGCTGTACGGGAAGGGCACCAATCAGAGGTTCTACTCAGCATTGCCGACGAGTTTCCTCCTGACCGGTGCTTCACCCTTGTGTTTCGTGGACGAAGAGGCAACTTGGACCTAGTGGCCGAATCCACAAAGGAGGCACAATCATGGATAAAAGGGATACGCAAACTCATCGATAACCTAGAGAACATGGGGCAGAGAGAGAAACTGGACCAATGGATCTGTGACTGGTTTAAAAAGGCAGACAAAAACCGAGACGGACGGATGAACTTTAAGGAGGTCAGAGATCTGTTGAAGATGATGAACGTGGACATGAACGAGCACCACGCTCTCCGTCTCTTCACGATGGCGGATCGGTCTCAGTCGGGAACACTCGAGGATGATGAGTTTGTGTTGTTTTATAAGATGCTGACTCAGCGCGAGGACATCCTGCGAGTGTTTCAGGAATATTCAGCCGATGGACAGAAGCTAACGCTCAAAGATCTGAAAGATTTCTTGCAGGAGGAACAGTTACATGAGGACGGAGTTCAACAATACGCACTTAATCTCATTGAACGCTTTGAACCATCTGACACGGCGAAAATGTTACAAGCAATGACGTTTGATGGTTTCCTAATGTACCTGAGCTCATCAGAGGGCTCCATCTTCAACCCTGCAATGCTCGAACTCTACCAAGACATGTCTCAGCCTCTCTGCCATTATTTCATATCATCTTCTCATAACACATACCTACTGGAGGACCAAATCAGAGGACTTAGCAGTGTGGAAGGCTATATACGAGCACTGAAACGTGGCTGTCGATGTGTGGAAGTGGACTGTTGGGATGGACCAAATGGAGAGCCAATTGTCTATCATGGGCACACATTCACATCCAAGATCTTCTTCAAGGATGTTGTCACTGTGCTGGGCAACTATTCTTTTAAAGCATCAGAGTACCCTGTCATCCTGTccattgagaaccactgcagtgTAGAGCAGCAGAAAATCATGGCCCAACACCTCACCCAGATCCTGGGAGACAAGCTGCTGAAAAGCACTTTAGATGGAAAGATTCCCCTCGGCCTCCCGTCCCCTGAGATTCTGTTGAAAGGAAAGAAGATAGGTGGATTAGAGGATGGCATGAATGGAGTAGTGGATGACCCTTTGATGGGAGAGGTGAGCGACGAAGAGGAGGCCACTGAAATTGAGGATGAAAATCATCGCAACAACAGCATACGACACAGAAGCAAGAAATCCAAACAGCGGCTGTCTAAAGAGCTGTCCGACTGTGTGGTTTACTGCAAGAGTGTCCACTTTAGCAGCTTTAAACATTCACGAAATCACTCCAAGTTTTACGAGATCTCCTCCTTCACGGAGTCTAAGGCCCGGAAGCACATAAGGGAGGCAGGAGCAGAGTTTGTTCTTCATAATGCCCGTCAGTTGAGTCGGGTTTACCCTAGTGGTTTGAGAACCGACTCCTCCAACTTTAACCCACAGGACTTGTGGAATGCAGGGTGCCAAATTGTTGCTCTAAACTTTCAGACAGCAGGGGTTGAGATGGACCTAAATGACGGCTTATTCAATCAAAATGGACGTTGTGGCTACGTATTAAAACCAGCGTTCATGCGCAACTTTGAAGAGATGTTTGACCCCGAAAACCCTCAAAATCGAGAAGATTACAAGCCACTTAGCCTGTCCATACAGGTGATCAGCGGCCAACAGCTTCCAAAAGTAAACATCAAGGAGGGCTCAATCATTGACCCCTTCGTTCGAGTGGAGATTCATGGCGTACCACTGGATCAGGCCAAGCAGGAAACCAGATACATTGACAACAACGGTTTTAACCCGGTATGGTACGACACCCTTCAATTCACCATTCACGCTCCTGAATTGGCACTGGTGCGGTTTGTCGTAGAAGACTATGATAAAACCTCAAAGAACGACTTTGTGGGACAGTTCACTCTCCCTTTCACCTGTATTCAACCAGGATATCGTCACATTCATCTGCTTTCTAAGGATGGCACCAGCATACCTCCTTCCTCGCTTTTTGTTCATATCCGGATTACAAACTTAACCTGA

Function


GO:

id name namespace
GO:1901232 regulation of convergent extension involved in axis elongation biological_process
GO:0006629 lipid metabolic process biological_process
GO:0007223 Wnt signaling pathway, calcium modulating pathway biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0007340 acrosome reaction biological_process
GO:0048015 phosphatidylinositol-mediated signaling biological_process
GO:1904088 positive regulation of epiboly involved in gastrulation with mouth forming second biological_process
GO:0046488 phosphatidylinositol metabolic process biological_process
GO:0007165 signal transduction biological_process
GO:0016042 lipid catabolic process biological_process
GO:0019897 extrinsic component of plasma membrane cellular_component
GO:0030695 GTPase regulator activity molecular_function
GO:0005096 GTPase activator activity molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0005515 protein binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0004629 phospholipase C activity molecular_function
GO:0051020 GTPase binding molecular_function
GO:0008081 phosphoric diester hydrolase activity molecular_function
GO:0004435 phosphatidylinositol phospholipase C activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-654 Enables GTPase activator activity and GTPase binding activity. Acts upstream of or within Wnt signaling pathway, calcium modulating pathway; positive regulation of epiboly involved in gastrulation with mouth forming second; and regulation of convergent extension involved in axis elongation. Is extrinsic component of plasma membrane. Orthologous to human PLCD4 (phospholipase C delta 4).

Ensembl:

ensembl_id ENSDART00000136841

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00041257 lncRNA downstream 30050 12699121 ~ 12700988 (-) False XLOC_020972
TCONS_00041254 lncRNA downstream 104975 12624486 ~ 12626063 (-) True XLOC_020970
TCONS_00042353 lncRNA downstream 119737 12604318 ~ 12611301 (-) False XLOC_020970
TCONS_00041248 lncRNA downstream 121494 12604318 ~ 12609544 (-) False XLOC_020970
TCONS_00042352 lncRNA downstream 1032363 11697272 ~ 11698675 (-) True XLOC_020962
TCONS_00042354 lncRNA upstream 32300 12777889 ~ 12786441 (-) True XLOC_020975
TCONS_00041942 lncRNA upstream 187701 12933290 ~ 12934717 (-) False XLOC_020979
TCONS_00041267 lncRNA upstream 187971 12933560 ~ 12940709 (-) True XLOC_020979
TCONS_00042355 lncRNA upstream 204231 12949820 ~ 12950292 (-) True XLOC_020980
TCONS_00042356 lncRNA upstream 212633 12958222 ~ 12964877 (-) True XLOC_020981
TCONS_00041258 mRNA downstream 4482 12699121 ~ 12726556 (-) True XLOC_020972
TCONS_00041256 mRNA downstream 37201 12641580 ~ 12693837 (-) True XLOC_020971
TCONS_00041255 mRNA downstream 37205 12641580 ~ 12693833 (-) False XLOC_020971
TCONS_00041250 mRNA downstream 104831 12604417 ~ 12626207 (-) False XLOC_020970
TCONS_00041261 mRNA upstream 6697 12752286 ~ 12763350 (-) True XLOC_020974
TCONS_00041262 mRNA upstream 86086 12831675 ~ 12862415 (-) False XLOC_020976
TCONS_00041263 mRNA upstream 101360 12846949 ~ 12862415 (-) True XLOC_020976
TCONS_00041264 mRNA upstream 124686 12870275 ~ 12890921 (-) True XLOC_020977
TCONS_00041265 mRNA upstream 165647 12911236 ~ 12925741 (-) True XLOC_020978
TCONS_00041252 other downstream 104933 12617149 ~ 12626105 (-) False XLOC_020970
TCONS_00041253 other downstream 104959 12624266 ~ 12626079 (-) False XLOC_020970
TCONS_00041251 other downstream 119737 12607333 ~ 12611301 (-) False XLOC_020970
TCONS_00041246 other downstream 146084 12584839 ~ 12584954 (-) True XLOC_020969
TCONS_00041199 other downstream 1966991 10763933 ~ 10764047 (-) True XLOC_020940
TCONS_00041266 other upstream 187896 12933485 ~ 12934589 (-) False XLOC_020979
TCONS_00041270 other upstream 356147 13101736 ~ 13112322 (-) True XLOC_020984
TCONS_00041280 other upstream 965845 13711434 ~ 13716397 (-) False XLOC_020993
TCONS_00041282 other upstream 965845 13711434 ~ 13716585 (-) False XLOC_020993
TCONS_00041281 other upstream 965845 13711434 ~ 13716585 (-) False XLOC_020993

Expression Profile


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