RNA id: TU1286117


Basic Information

Item Value
RNA id TU1286117
length 406
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id G1130425
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 96506084 ~ 96507660 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggacagcgatcactcacctctgattagacaaagagcttctggatatcaggacagagatcactcacctcggattagacaaagagcttctagatatcaggacagcgatcactcacctcggattagacaaagagcttctggatatcaggacagcgatcactcacctcggattagacaaagagcttctggatatcaggacagcgatcactacctcggattagacaaagagcttctggatatcaggacagcgatcactcacctcggattagacaaagagcttctggatatcaggacagcgatcactcacctcggattagacaaagagcttctggatatcaggacagcgatcactcacctcggattagacaaagagcttctggatatcaggacagtgatcccTCACCTCGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1286055 lncRNA upstream 115663 96389134 ~ 96390421 (+) True G1130382
TU1286054 lncRNA upstream 116966 96388272 ~ 96389118 (+) True G1130381
TU1286053 lncRNA upstream 118981 96386045 ~ 96387103 (+) True G1130380
TU1286051 lncRNA upstream 120421 96385406 ~ 96385663 (+) True G1130379
TU1286048 lncRNA upstream 125283 96380588 ~ 96380801 (+) True G1130376
TU1286352 lncRNA downstream 96288 96603948 ~ 96606084 (+) False G1130575
TU1286355 lncRNA downstream 96288 96603948 ~ 96606084 (+) False G1130575
TU1286359 lncRNA downstream 96288 96603948 ~ 96606084 (+) False G1130575
TU1286348 lncRNA downstream 96376 96604036 ~ 96606084 (+) False G1130575
TU1286349 lncRNA downstream 96376 96604036 ~ 96606084 (+) False G1130575
XM_036939364.1 mRNA upstream 204745 96221904 ~ 96301339 (+) False LOC118937800
XM_036939365.1 mRNA upstream 204745 96221919 ~ 96301339 (+) False LOC118937800
XM_036939363.1 mRNA upstream 204745 96226587 ~ 96301339 (+) True LOC118937800
XM_036939362.1 mRNA upstream 204746 96221848 ~ 96301338 (+) False LOC118937800
XM_036939361.1 mRNA upstream 340690 96139773 ~ 96165394 (+) True tbc1d16
XM_036939370.1 mRNA downstream 35210 96542870 ~ 96594168 (+) False LOC110517345
XM_036939371.1 mRNA downstream 35210 96542870 ~ 96594168 (+) False LOC110517345
XM_036939372.1 mRNA downstream 35210 96542870 ~ 96594168 (+) True LOC110517345
XM_036939380.1 mRNA downstream 110579 96618239 ~ 96633339 (+) True LOC110512418
XR_005035250.1 mRNA downstream 119448 96627108 ~ 96630087 (+) False LOC118937803
TU1285388 other upstream 875509 95629603 ~ 95630575 (+) True LOC110538761
TU1285338 other upstream 986442 95519178 ~ 95519642 (+) True G1129772
TU1285157 other upstream 1196387 95300784 ~ 95309697 (+) True G1129613
TU1285124 other upstream 1239028 95266518 ~ 95267056 (+) True G1129601
TU1285103 other upstream 1252761 95252420 ~ 95253323 (+) True G1129591
TU1286334 other downstream 110596 96618256 ~ 96623345 (+) False G1130570
TU1286335 other downstream 113729 96621389 ~ 96623345 (+) False G1130570
TU1286333 other downstream 122906 96630566 ~ 96633452 (+) False G1130570
TU1286336 other downstream 122906 96630566 ~ 96633452 (+) False G1130570
TU1286341 other downstream 122906 96630566 ~ 96633452 (+) True G1130570

Expression Profile