RNA id: TCONS_00042354


Basic Information

Item Value
RNA id TCONS_00042354
length 681
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id XLOC_020975
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 12777889 ~ 12786441 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCGTTCTCTCTGGAGCTTTTCAACAGCGCAGAAACTTTTGCTTCAGTCTACAAATCAACAAGCCACAAAATCAACCAAGTCAGCGCAATCCAGCATGGCCTTCAGCGGGATCAGACCAACAATCTGAGATCCCACCACTGGAAGGTTCAAGTCCTGCACATGAACAGACATCCTGTTGATCAATCTGACtctgtttcttctcctcagtgtcagtatattgcgcacatTCATGATCACATTCAAATATGCATATGCTTTACATCattgtttctatgtttgtttatacTACTACTAGTATCATTCATAGCACTTAATTTTTGCATCTCGTGTTTAAATACacaatgaacagcagctacgctaattattttctttattctccatttccacctgagGATCCTCATcctgaggcctctagagattgtgcaggGCCATTGATGCGATCaaagacctgtgaagaaatgatgccaaggtatccataatgctagaccaggctgtatcctgagcagatgctgcgGCAATCATGGAGGAGCAgggagcatgagactgattcctgataTGCCAATTCAGATTTGAAGTTGACTCACCTTGGCGTCTCTACAGATCTCTTCATACACCGTGTGCATTGGCGTCAGCTCAAAGTCCAGGATATTAGTGGACACTTGCGCCAGATTGGACTCTTC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00041257 lncRNA downstream 76901 12699121 ~ 12700988 (-) False XLOC_020972
TCONS_00041254 lncRNA downstream 151826 12624486 ~ 12626063 (-) True XLOC_020970
TCONS_00042353 lncRNA downstream 166588 12604318 ~ 12611301 (-) False XLOC_020970
TCONS_00041248 lncRNA downstream 168345 12604318 ~ 12609544 (-) False XLOC_020970
TCONS_00042352 lncRNA downstream 1079214 11697272 ~ 11698675 (-) True XLOC_020962
TCONS_00041942 lncRNA upstream 146849 12933290 ~ 12934717 (-) False XLOC_020979
TCONS_00041267 lncRNA upstream 147119 12933560 ~ 12940709 (-) True XLOC_020979
TCONS_00042355 lncRNA upstream 163379 12949820 ~ 12950292 (-) True XLOC_020980
TCONS_00042356 lncRNA upstream 171781 12958222 ~ 12964877 (-) True XLOC_020981
TCONS_00042357 lncRNA upstream 401420 13187861 ~ 13188332 (-) True XLOC_020985
TCONS_00041261 mRNA downstream 14539 12752286 ~ 12763350 (-) True XLOC_020974
TCONS_00041259 mRNA downstream 31350 12729329 ~ 12746539 (-) False XLOC_020973
TCONS_00041260 mRNA downstream 32300 12731038 ~ 12745589 (-) True XLOC_020973
TCONS_00041258 mRNA downstream 51333 12699121 ~ 12726556 (-) True XLOC_020972
TCONS_00041256 mRNA downstream 84052 12641580 ~ 12693837 (-) True XLOC_020971
TCONS_00041262 mRNA upstream 45234 12831675 ~ 12862415 (-) False XLOC_020976
TCONS_00041263 mRNA upstream 60508 12846949 ~ 12862415 (-) True XLOC_020976
TCONS_00041264 mRNA upstream 83834 12870275 ~ 12890921 (-) True XLOC_020977
TCONS_00041265 mRNA upstream 124795 12911236 ~ 12925741 (-) True XLOC_020978
TCONS_00041268 mRNA upstream 192772 12979213 ~ 13042992 (-) True XLOC_020982
TCONS_00041252 other downstream 151784 12617149 ~ 12626105 (-) False XLOC_020970
TCONS_00041253 other downstream 151810 12624266 ~ 12626079 (-) False XLOC_020970
TCONS_00041251 other downstream 166588 12607333 ~ 12611301 (-) False XLOC_020970
TCONS_00041246 other downstream 192935 12584839 ~ 12584954 (-) True XLOC_020969
TCONS_00041199 other downstream 2013842 10763933 ~ 10764047 (-) True XLOC_020940
TCONS_00041266 other upstream 147044 12933485 ~ 12934589 (-) False XLOC_020979
TCONS_00041270 other upstream 315295 13101736 ~ 13112322 (-) True XLOC_020984
TCONS_00041280 other upstream 924993 13711434 ~ 13716397 (-) False XLOC_020993
TCONS_00041282 other upstream 924993 13711434 ~ 13716585 (-) False XLOC_020993
TCONS_00041281 other upstream 924993 13711434 ~ 13716585 (-) False XLOC_020993

Expression Profile

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