RNA id: TU1286306


Basic Information

Item Value
RNA id TU1286306
length 3395
lncRNA type inter_gene
GC content 0.40
exon number 11
gene id G1130556
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 96532652 ~ 96541692 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggtgttgtctgaacaggtataaagacaaggttggtgatatactgccccctggagggtgttgtctgaacaggtataaagacaaggttggtgatttactgccccctggagggtgttgtctgaacaggtataaagacatggttggtgatttactgccccctggagggtgtctgttgtctctatcattctctatggtgtGTACCTGCTTCAGGCAAGGCATGTGTATGAACAGCTGGCTTCTGAAGAATGCCACCCAAGGATACACCTCAGGGAAAGCTTTTAATTTATTGATGATTATACAGGTACAAATCATAGACCCAAAGGACTAACTGGAACTGATTATGAATGTAACCCACCTTCCACAATATCATTAAAACATTTATCCTCAGACTACCATACGGTGTATTTGATTGAAcaattcaaaaataaaatatattatcCTCTGATTGGGCCCAGTCTATGTGGTTTGcactcacagtaacaacaggcttacatctatactattgacaggtcactcacagtaacaacaggcttacatctatactattgacaggtcactcacagtaacaacaggcttacatctatactattgacaggtcactcacagtaacaacaggcttacatctatactattgacaggtcactcacagtaacaacaggcttacatctatactattgacaggtcactcacagtaacaacagacctacatctatactattgacaggtcactcacagtaacaacaggcttacatctatactattgacaggtcactcacagtaacaacagacctacatctatactattgacaggtcactcacagtaacaacaggcTTACATCTATACTACTGACAGgtcactcacagtaacaacagTTCTACATCTATACTACTGACAGgtcactcacagtaacaacagttctacatctatactattgacaggtcactcacagtaacaacaggcttacatctatactattgacaggtccctcacagtaacaacaggcttacatctatactattgacaagtcactcacagtaacaacaggcctacatctatactattgacaggtcactcacagtaacaacaggcttacatctatactattgacaggtcactcacagtaacaacaggtctacatctatactattgacaggtcactcacagtaacaacagTTCTACATCTATACTACTGACAAgtcactcacagtaacaacaggcctacatctatactattgacaggtcactcacagtaacaacaggcttacatctatactattgacaggtcactcacagtaacaacaggcctacatctatactattgacaggtcactcacagtaacaacaggcttacatctatactattgacaggtcactcacagtaacaacaggcTTACATCTATACTACTGACAGgtcactcacagtaacaacagTTCTACATCTATACTACTGACAGgtcactcacagtaacaacagttctacatctatactattgacaggtcactcacagtaacaacagttctacatctatactattgacaggtcactcacagtaacaacagttctacatctatactattgacaggtcactcacagtaacaacagttctacatctatactattgacaggtcactcacagtaacaacagttctacatctatactattgacaggtcactcacagtaacaacaggcctacatctatactattgacaggtccctcacagtaacaacaggcttacatctatactattgacaggtcactcacagtaacaacaggcttacatctatactattgacaggtcactcacagtaacaacaggcttacatctatactattgacaggtcactcacagtaacaacagACCTACATCTATACTACTGACAGGTCACTCACAGTAACAACCACCTTTTCACAGTTTGGACTCTACTAAATAAAGGTTCATCAAAATACAGTCCGGTGTCAACAACCAACATCCCAAATGGGACAAATTTAATCAGAGAAACAGTGATGTCAGTGTAGATCAGTGAGAGTGGTCGAGGCACAGATATCCAATGAAATTagtgtttaaatcaaatcaaatccaagttcatttgtcacgtgcgccgaatacaacagatgtacaccttacagtgaaatgctgacttacagcctctaaccaacagtgtagaccttacagtgaaatgctgacttacagcctctaaccaacagtgcagaaaaaggtattaggtgaacaatagatgagaaaagaaataaaacaacagtaaaaagacaggctatatacagtagagaggctatatacagtagagaggctatatacagtagagaggctatatacagtcaagaggctatatacagtagagaggctatatacagtcaagaggctatatacagtagagaggctatatacagtagagaggctatatacagtagagaggctatatacagtagagaggctatataaagtagacaggctatatacagtagaggctatatacagtagagaggctatatacagtagaggctataacagtagagaggctatatacagtagagaggctataacagtagagaggctatatacagtagagaggctatatacagtagagaggctataacagtagagaggctatatacagtagtgaggctatatacagtagagagactatatacagtagagaggctatatacagtagaggctctatacagtagagagactatatacagtagagaggctatatacagtagagaggctatatacagtggagaggctatatacagtagagaggctatatacagtagagaggctatatacagtcaagaggctatatacagtagagagactatatacagtagagaggctataacagtagagaggctatatacagtagagaggctatatacagtagagaggctataacagtagagaggctatatacagtagagaggctatatacagtagcgaggctatatacagtagcgaggctatatacagtagagaggctatatacagtagcgaggctataacagtagcgaggctataacagtagcgaggctataacagtagagaggctataacagtagcgaggctataacagtagagaggctacatacagacaccggttagtcaggctgattgaggtagtatgtagatctggttaaagtgactatgcatatatgatgaacagagagtagcagtagcgttaaagaggggttggcaggaaTGTGGGATATATGTCATTCTATGGGTTAATTTCGTGGTGCCTCTGCTCAGAAACATGTATGGGCTAAAACACACTCAGGACAGAActgagtgtgaaagagagagagagatgaacacagTTGGAACAGAATATCCCACATTCAGAACACAGTGGACCCGAGGGCAGGAATAATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1286259 lncRNA downstream 8706 96520869 ~ 96523946 (-) True G1130520
TU1286303 lncRNA downstream 13429 96518201 ~ 96519223 (-) True G1130555
TU1286239 lncRNA downstream 140471 96391576 ~ 96392181 (-) True G1130508
TU1286237 lncRNA downstream 141633 96390623 ~ 96391019 (-) True G1130506
TU1286236 lncRNA downstream 142351 96389587 ~ 96390301 (-) True G1130505
TU1286755 lncRNA upstream 37938 96579630 ~ 96579987 (-) True G1130845
TU1286760 lncRNA upstream 40818 96582510 ~ 96583012 (-) True G1130847
TU1286752 lncRNA upstream 52114 96593806 ~ 96594388 (-) True G1130842
TU1286748 lncRNA upstream 58645 96600337 ~ 96600864 (-) False G1130841
TU1286749 lncRNA upstream 58645 96600337 ~ 96600864 (-) True G1130841
XM_021625833.2 mRNA downstream 27414 96498544 ~ 96505238 (-) True LOC110538851
XM_036939369.1 mRNA downstream 96859 96392239 ~ 96435793 (-) False LOC110516715
XM_036939366.1 mRNA downstream 166666 96314326 ~ 96365986 (-) True LOC118937802
XM_036939367.1 mRNA downstream 191528 96314326 ~ 96341124 (-) False LOC118937802
XR_005035246.1 mRNA downstream 219647 96305868 ~ 96313005 (-) False LOC118937801
XM_036939373.1 mRNA upstream 63682 96605374 ~ 96610119 (-) True LOC110494398
XM_036939381.1 mRNA upstream 91722 96633414 ~ 96637111 (-) False eef2kmt
XM_036939558.1 mRNA upstream 172598 96714290 ~ 96728931 (-) False LOC110518479
XM_036939560.1 mRNA upstream 187290 96728982 ~ 96753421 (-) True LOC118937835
LOC110485334 mRNA upstream 299919 96841611 ~ 96845185 (-) True LOC110485334
TU1286238 other downstream 97302 96392399 ~ 96435350 (-) True LOC110516715
TU1285748 other downstream 686369 95845107 ~ 95846283 (-) False G1130145
TU1285638 other downstream 906487 95625758 ~ 95626165 (-) True G1130049
TU1285529 other downstream 1138685 95392201 ~ 95393967 (-) True G1129951
TU1285045 other downstream 1439559 95092622 ~ 95093093 (-) True G1129544
TU1286832 other upstream 160715 96702407 ~ 96705588 (-) True G1130893
TU1286846 other upstream 173099 96714791 ~ 96715635 (-) True LOC110518479
TU1286930 other upstream 320451 96862143 ~ 96867423 (-) True LOC110487147
TU1286950 other upstream 434483 96976175 ~ 96981940 (-) True LOC110519445
TU1286954 other upstream 561798 97103490 ~ 97106756 (-) True LOC110515892

Expression Profile