RNA id: TU1286391


Basic Information

Item Value
RNA id TU1286391
length 244
lncRNA type intronic
GC content 0.38
exon number 2
gene id G1130598
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 96690626 ~ 96690906 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tagtagtatgataggtgttgttctacagggtcagtcatagtagtatgataggtgttgttgtacagggtcatagtagtatgataggtgttgttttacagggtcagtcatagtaggatgataggtgttgttttacagggtcagtcatagtagtatgataggtgttgttttacagggtcagtcatagtagtatgataggtgttgttttactgggtcagtcatagtagtatgataggtgttgttttac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1286383 lncRNA upstream 6672 96682192 ~ 96683954 (+) False G1130594
TU1286384 lncRNA upstream 6672 96682192 ~ 96683954 (+) False G1130594
TU1286385 lncRNA upstream 6672 96682803 ~ 96683954 (+) True G1130594
TU1286310 lncRNA upstream 18018 96671806 ~ 96672608 (+) False LOC110494408
TU1286311 lncRNA upstream 18018 96671806 ~ 96672608 (+) True LOC110494408
TU1286399 lncRNA downstream 15772 96706678 ~ 96707052 (+) False G1130604
TU1286400 lncRNA downstream 15772 96706678 ~ 96706937 (+) True G1130604
TU1286409 lncRNA downstream 36939 96727845 ~ 96728202 (+) True G1130611
TU1286430 lncRNA downstream 89003 96779909 ~ 96865354 (+) True G1130629
TU1286444 lncRNA downstream 143826 96834732 ~ 96835297 (+) True G1130641
XR_005035251.1 mRNA upstream 18001 96671465 ~ 96672625 (+) False LOC110494408
XM_036939374.1 mRNA upstream 20180 96637890 ~ 96670446 (+) False LOC110494405
XM_036939376.1 mRNA upstream 20180 96637988 ~ 96670446 (+) False LOC110494405
XM_036939375.1 mRNA upstream 20180 96638731 ~ 96670446 (+) True LOC110494405
XM_036939378.1 mRNA upstream 20208 96637890 ~ 96670418 (+) False LOC110494405
XM_036939384.1 mRNA downstream 77485 96768391 ~ 96838680 (+) True LOC110485332
XM_036939387.1 mRNA downstream 179016 96869922 ~ 96872737 (+) False LOC118937805
XM_036939388.1 mRNA downstream 179948 96870854 ~ 96872737 (+) True LOC118937805
XM_036939396.1 mRNA downstream 363935 97054841 ~ 97069129 (+) True LOC118937806
XM_036939399.1 mRNA downstream 549152 97240058 ~ 97298946 (+) False LOC110539044
TU1286333 other upstream 57174 96630566 ~ 96633452 (+) False G1130570
TU1286336 other upstream 57174 96630566 ~ 96633452 (+) False G1130570
TU1286341 other upstream 57174 96630566 ~ 96633452 (+) True G1130570
TU1286334 other upstream 67281 96618256 ~ 96623345 (+) False G1130570
TU1286655 other downstream 471356 97162262 ~ 97163079 (+) True G1130780
TU1287587 other downstream 1129818 97820724 ~ 97822057 (+) True G1131438
TU1287770 other downstream 1569103 98260009 ~ 98266027 (+) False LOC118936514
TU1287769 other downstream 1569256 98260162 ~ 98266027 (+) False LOC118936514
TU1288518 other downstream 2033951 98724857 ~ 98725197 (+) True G1132060

Expression Profile