RNA id: TU1286399


Basic Information

Item Value
RNA id TU1286399
length 242
lncRNA type inter_gene
GC content 0.50
exon number 3
gene id G1130604
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 96706678 ~ 96707052 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acctctgaaccagggtctgtagtgatatagcctctagcactgagatgcagtgtcttagaccgctgaaccaggtactgtagtgatatagcctctagcactgagatgcagtgtcttagaccactgaaccaggtactgtagtgactcctctagcactgagatgcagtgtcatagaccactgaaccagggtctgtagtgatatcgcctctagcactgagatgaggtgccttagaccactgcaccac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1286391 lncRNA upstream 15772 96690626 ~ 96690906 (+) True G1130598
TU1286383 lncRNA upstream 22724 96682192 ~ 96683954 (+) False G1130594
TU1286384 lncRNA upstream 22724 96682192 ~ 96683954 (+) False G1130594
TU1286385 lncRNA upstream 22724 96682803 ~ 96683954 (+) True G1130594
TU1286310 lncRNA upstream 34070 96671806 ~ 96672608 (+) False LOC110494408
TU1286409 lncRNA downstream 20793 96727845 ~ 96728202 (+) True G1130611
TU1286430 lncRNA downstream 72857 96779909 ~ 96865354 (+) True G1130629
TU1286444 lncRNA downstream 127680 96834732 ~ 96835297 (+) True G1130641
TU1286447 lncRNA downstream 135919 96842971 ~ 96845964 (+) True G1130642
TU1286487 lncRNA downstream 163716 96870768 ~ 96897111 (+) False G1130655
XM_036939383.1 mRNA upstream 3953 96676774 ~ 96702725 (+) False LOC118937804
XM_036939382.1 mRNA upstream 3953 96676775 ~ 96702725 (+) False LOC118937804
XR_005035251.1 mRNA upstream 34053 96671465 ~ 96672625 (+) False LOC110494408
XM_036939374.1 mRNA upstream 36232 96637890 ~ 96670446 (+) False LOC110494405
XM_036939376.1 mRNA upstream 36232 96637988 ~ 96670446 (+) False LOC110494405
XM_036939384.1 mRNA downstream 61339 96768391 ~ 96838680 (+) True LOC110485332
XM_036939387.1 mRNA downstream 162870 96869922 ~ 96872737 (+) False LOC118937805
XM_036939388.1 mRNA downstream 163802 96870854 ~ 96872737 (+) True LOC118937805
XM_036939396.1 mRNA downstream 347789 97054841 ~ 97069129 (+) True LOC118937806
XM_036939399.1 mRNA downstream 533006 97240058 ~ 97298946 (+) False LOC110539044
TU1286316 other upstream 4741 96678532 ~ 96701937 (+) True LOC118937804
TU1286333 other upstream 73226 96630566 ~ 96633452 (+) False G1130570
TU1286336 other upstream 73226 96630566 ~ 96633452 (+) False G1130570
TU1286341 other upstream 73226 96630566 ~ 96633452 (+) True G1130570
TU1286334 other upstream 83333 96618256 ~ 96623345 (+) False G1130570
TU1286655 other downstream 455210 97162262 ~ 97163079 (+) True G1130780
TU1287587 other downstream 1113672 97820724 ~ 97822057 (+) True G1131438
TU1287770 other downstream 1552957 98260009 ~ 98266027 (+) False LOC118936514
TU1287769 other downstream 1553110 98260162 ~ 98266027 (+) False LOC118936514
TU1288518 other downstream 2017805 98724857 ~ 98725197 (+) True G1132060

Expression Profile