RNA id: TCONS_00042356


Basic Information

Item Value
RNA id TCONS_00042356
length 699
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id XLOC_020981
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 12958222 ~ 12964877 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AttcgcaaactgtcgtagtttattaaagatacaacCCCCTCACGTtacgtcagctgcaccttcagcaaaaaCCTCCTAAAacatgcagcacgaggacttttatgatcatttatgagtgtcaaaagtggtaGATCTTCCTTTTAACCAGCAAACGTCCTCAGTGTGCTACTAATACATCTGACCAGTCAATCTTCATACATCcacccattcattttcttttcggcttagtctctttattaatctgttgttgtttcatttttagaACAATTTGTAGAACTCTATCTTAACAGTTATCGTCCTTTTTGTGAACAGGCCTTTAAAGAAATCATAAAATGGCTTCAGTTTTTCACTCCAACTAGTCAATGAGTTGAGTTTGGATCAAGTTTGACCTTTCCTTCAGATgttaaacagtttgctgcatcgACCTTgatattttcaatgttttcatGGCGGCTTCACTCCAAATCCCCTTGAAAGACGACacactttttttcccttttttctctctctctttctcagctgTTGTCAGTCTGTCAATGGCTATTAGTTCAACTACATCTCTCCGGCCTCTCTTTTCTTTCCAGCTATTGATTTTGTGGAGTTTACTGTAAGGATCTGCTGATGAAATAATCGGCCGGCACTATCGTAATTCAACACAGGCCGCTGAAAGTAGATTCACACAAAGTAGCGCTGATggga

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042355 lncRNA downstream 7930 12949820 ~ 12950292 (-) True XLOC_020980
TCONS_00041267 lncRNA downstream 17513 12933560 ~ 12940709 (-) True XLOC_020979
TCONS_00041942 lncRNA downstream 23505 12933290 ~ 12934717 (-) False XLOC_020979
TCONS_00042354 lncRNA downstream 171781 12777889 ~ 12786441 (-) True XLOC_020975
TCONS_00041257 lncRNA downstream 257234 12699121 ~ 12700988 (-) False XLOC_020972
TCONS_00042357 lncRNA upstream 222984 13187861 ~ 13188332 (-) True XLOC_020985
TCONS_00042358 lncRNA upstream 236601 13201478 ~ 13244142 (-) False XLOC_020986
TCONS_00041271 lncRNA upstream 253988 13218865 ~ 13238671 (-) False XLOC_020986
TCONS_00041943 lncRNA upstream 253988 13218865 ~ 13244231 (-) False XLOC_020986
TCONS_00041272 lncRNA upstream 253988 13218865 ~ 13244551 (-) True XLOC_020986
TCONS_00041265 mRNA downstream 32481 12911236 ~ 12925741 (-) True XLOC_020978
TCONS_00041264 mRNA downstream 67301 12870275 ~ 12890921 (-) True XLOC_020977
TCONS_00041262 mRNA downstream 95807 12831675 ~ 12862415 (-) False XLOC_020976
TCONS_00041263 mRNA downstream 95807 12846949 ~ 12862415 (-) True XLOC_020976
TCONS_00041261 mRNA downstream 194872 12752286 ~ 12763350 (-) True XLOC_020974
TCONS_00041268 mRNA upstream 14336 12979213 ~ 13042992 (-) True XLOC_020982
TCONS_00041269 mRNA upstream 81393 13046270 ~ 13165186 (-) True XLOC_020983
TCONS_00041273 mRNA upstream 311816 13276693 ~ 13350356 (-) False XLOC_020987
TCONS_00041274 mRNA upstream 317600 13282477 ~ 13350240 (-) False XLOC_020987
TCONS_00041277 mRNA upstream 493858 13458735 ~ 13544244 (-) False XLOC_020989
TCONS_00041266 other downstream 23633 12933485 ~ 12934589 (-) False XLOC_020979
TCONS_00041252 other downstream 332117 12617149 ~ 12626105 (-) False XLOC_020970
TCONS_00041253 other downstream 332143 12624266 ~ 12626079 (-) False XLOC_020970
TCONS_00041251 other downstream 346921 12607333 ~ 12611301 (-) False XLOC_020970
TCONS_00041246 other downstream 373268 12584839 ~ 12584954 (-) True XLOC_020969
TCONS_00041270 other upstream 136859 13101736 ~ 13112322 (-) True XLOC_020984
TCONS_00041280 other upstream 746557 13711434 ~ 13716397 (-) False XLOC_020993
TCONS_00041282 other upstream 746557 13711434 ~ 13716585 (-) False XLOC_020993
TCONS_00041281 other upstream 746557 13711434 ~ 13716585 (-) False XLOC_020993
TCONS_00041283 other upstream 747715 13712592 ~ 13716020 (-) False XLOC_020993

Expression Profile

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