RNA id: TCONS_00004033


Basic Information

Item Value
RNA id TCONS_00004033
length 5710
RNA type mRNA
GC content 0.39
exon number 4
gene id XLOC_002082
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 21559605 ~ 21649172 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGATTGCTCAAGGTATTTTTGCATCATAACagctattcatttttgtttatgtcAATCGTCGTTTAGCAAGATTACCTACTCGGTCTCAGAGGAGGTAAATAAAGGGACTGTTGTCGGAAATATTGCAAAAGATATCAAGATTGGTGTCCAGGAGCTGGAATCTCGCATCTTGCAGCTTGTCTCTGGATCTAACAGAAAATATTTTGATGTGAATTTGAAAACGGGAGCGCTGTTTGTGAATGAAAGAATCGACCGGGAGGAGTTATGCTTCGCTCATCAGCAGTGTGCTCTTAATTTAGAGGCTGTTGTTCAGAATCCTCATAGTCTACATCGAATTGAAATTAATGTTCTGGATGTTAACGACAATGCTCCTTATTTTGTGGACAGCGTTATAACGATAAACATTACAGAGGATGTTGTTCCGGGAACTAGATTTCACCTTCCTGTAGCTGAAGATAACGACATTGGCACTAATGCACTCAAAGACTACAAACTGAGCAGGAATGAACACTTTTCTATTGACGTACAAACTGAAGAGCAAAGTGTGTCTGCTGAATTAGTGCTCCAAAAGCCTTTAGATCGTGAAAAGCAATCGGTTATTCCTCTCGTATTGACCTCTTTTGATGGAGGAAAGCCGGCAAAGACAGGCACATTAAGTGTAATAGTGAATGTACTGGACATAAATGATAACTGGCCTGTCTTCAGCAAACCTTTGTACAAAGGTAAGGTGAGAGAAAATGTTCCTGTTGGTACAAAAATAATCTCTTTAACTGCTACTGATTTGGATGAGGGAACCAACAGTGACATTATATACTCCATAGCTGAACATGGAAACTCAAAAAAGCAAAGTTTATTCACTGTGGTTCCTGAAAATGGGGACATTGTTGTGAAGGGTGAAATAGACCATGAGCTGAATGCTGCAATTGAATTGCGAGTCCAGGCAAGAGATAAAGGCAGTCCACCAAAGAGCACACAGTGTAAAGTTTTAATTGAAGTCATGGATGAAAATGATAATGCACCAGAGATAATTGTGACTCGACTGCTTGAAAGTGTGAAAGAAGACACAAAGTCAGGAACTGCTGTTGCTTTAGTCACAGTGTCTGATAAAGATGGAGGTAAAAATGGCATTGTACACTGTGCACTGAAAGGTTTATTTCCTTTCAAACTGGAGACATCATACAATAATCATTATTCTCTAGTGGTAGATGGACCTCTAGACAGAGAGAGTGTTTCTCAGTATAACATCACTATTACAGCTGCAGATGAAGGAACTCCGCCTCTTTCCAGCAGCACAGTTATAACTGTTCATATCTCTGATGTTAATGACAATGCTCCACATTTCCCAGCACCCGTTATTAACGCTTTTCTAGATGAGAATAGTCAAGCTGGAGGTCTCGTGACAAAAGTGACTGCTGAAGATTCAGACACTGGTGAGAACGCAGAACTTTCATATTCACTGTTAGACAGTTCCAGCTCCAGCATTCCTGTAACAACACTGATAAATATCAACTCTTTAAGTGGAGAAATATTCAGTTTGCAATCCTTTAATCATGAAGAGACCAAAAGATTTCAGTTTCAAGTTATGGCTACAGACACTGGTGTTCCTCCTTTGAGCAGTAATGCGACTGTAAATGTGTTTATTCTGGATGAGAATGACAACAGTCCGGTTATTTTAGCACCTTATTCTGAACCTGGATCAGTTAATACTGAGAACATCCCCTACTCTGCTGAAGCGGGATACTTTGTAGCCAAGATCAGAGCTGTTGATGCTGACTCTGGATATAACGCACTTCTGTCTTATCATATAACTGAACCCAAAGGAACTAATCTCTTCCGCATTGGAAGCAGCACTGGAGAAATAAGGACTAAGAGACGAATGAGTGACAATGACTTAAAAACTCACCCACTGATTATTACAGTGTCTGATAATGGAGAGCCATCGCTCTCAGCGACTACGTCCATGGATGTTGTGGTTCTCGAGAGTCTGGATGATATAAAGACATTATTCAGAGAAGTTCCTGTTAAAGAGGAGAGTTTTTCAGATCTGAATCTGTATCTGCTCATCGCTATTGTCTCAGTATCAGTCATCTTTTTACTGAGTCTCGTGGGTTTGATAGCAGCTAAATGCTACAGGACAGACAGCAGTTTCAGCAGGTACGGCGCTCCAGTGATCAACACACATCCAGACGGCAGCTGGTCCTTTTCTAAATCTACTCAACAGTACGACGTGTGTTTTAGTTCAGACACAATAAAGAGTGATGTAGTGGTTTTCCCTTCAACGTTTCCAATGCAAGATGCAGAACTAATCAGCATAAATGAAGGAGACACTTTTAATAGTGCTCAAACACTTCCAAGTACTAACAAGCCCAAAGGCCCAAATGCTGACTGGCGTTACTCTGCGTCGCTGAGGGCAGGAGTGCAGAGTTCTGTGCATATGGAGGAGGCATCAGCTGTGATGCAAGGAGCGCAAGGCATGCTGGTCCAGAATTGGCCCACGGTTTCCAGCGCAGCAGATGGTGAAGGAGAGGGGCAGCTGTCTCCTCCTGTTGGAGCTGGAATCAACAGTAACAGCTGGAGCTTCCGCTATGGTGCGGGCCCCGGATACGGCCCTCCACAAGCCCTAAAGCCGGGAGAGATTCCCCCTGAAGCCTTCATCATTCCCGGCTCTCCGGCCATCATCTCCATCCGGCAGGACCCAGGTGCCGTGGATGATAAGGGCGAGTTCATCACTTTCGGGAAGAAAGAGGAgtctaagaagaagaaaaagaagaagaaggaaaaGAAGGACAAGAAGGATAAAGGGAAAGATGATGGCGAGGAGTAATGAAGAACGTCCCACTACAATATTAAAGCTATCAACTTGCGTTTGtagcaaataatgacagaaagAGAAAACCAAAAATACTGAAAACATTAAGAGAGGAGAAAATTCCTTCAATATACCATATCTACAAAGTCCAGGCTGAAAAGAGTTTGCTCTATGTGCAGACACatataaataacacaaattatCCCAGTGAACATTTACATGACTATAATTGGCTATTTTTATAGTTCTAACCCATCTAAGAAAGACTCTGCagtctacaaaataaaaaaacccaGCCCACTCACGCCTTGTAAATGATATTTTCATCCACAGCAAAGGATGTCCCTCTCTCTTAAAAGGATCAAACTAATTTCCAGTTAAACTGGATATGAACTCATCCAAGAGTTTTCTCTGCCTTCGTCCCTCATCTTCATATGGGAAAGAAACAACCTCCCCGGGCCCCCATCTCACGTCTTGATCTGCAAGGAATAAAACTTTCCAGACACAAATTTGACTGCACCTTCACCAAAAAGACCGGTGTCTGATTTCTATAGCAGATCTAAAAGTAAGAGATAGGAATGTAGCAGTCAAATCAACTCCTGAAATATTCTAGAAAAGAACAAAGAGATCGCTACTGATTCTGCTCCCGAACAAATCTCAGAACGACACTTTACTCAGCATTTTTTGTAAGAGCAATCCAATACTCTAATACAATCCAAAATTATGCACATCCAAGATATGTAGAAATACAAATCGAAAAATATGATGCATAAACCTAGAGATTGTTGCTCTCTAAAGCATTACAGGCTGTCCGCACACTGGACAGCTAAAGGACTGAAGCACAACAGCCTCtcaaaagtctgtaaaatagtgCTCAtcgcttcatttaaaaaaaagtcaacttcCTTTGCTGCAGTTTTGAATGTCTGATAGCCGTCATCCCACTTTCCGCCAGCTTTAAGTCTTATTCCAGCTACTTTCCAACAGCTTACACCCTTTGCATCTCTGATGATATCCGAGTTTGTTCCCTAAGTCTGTAGACACTGTACAAAAGGTGCTTGTTGCTTCATTTCAAAACTCACTAAATTGATTTGCTGCCGTTTTGAATGTTTGATAGGCGTCATCTTATTTCGTCCCATCTGTATAATCATAGTCCAGCTACTTTTTTTCCTACAGCTTGTAACTAACATTGCCATCCTCCCTTTATCAGATGTGCTGTGCTGGCCTCATGTCAGTACTGCCCCCTGGTGGTGCGTGTAGTATAATGTAACAGGAAAGAGCAGAAAAAAAGCCACTCCTTCTGCAGGACACATAAGCACATGTACTGGCCCCTACATTCAAGTATAAATTCAATATACACCCGTGTTTATGCTTTGACAGCAGTGGAGCTAACCGTGGACTATGCAGCTATGCTTATGGAGAAGTTTAGCCATGGCGTATGGTGCTTTCTAGAACGATGATAGAGGGTTAGCGGAGATTAGACTGAGGAACTATAGCAGAGGGCAGTATAGAGTTTTTCTACTGTATATAATTATTGTCGAAACATAGCTTCatgacatttttgtaaataatggGAACATTTTCTTAACATTCTGACATCATGATTAAGGTTTCAGTTTGTTTTCGTTCTTTTTTTAGAGGGAGCACATCTCTTCTTTTCTTTAAATATACTGTTAAGTAAAGGAGAGATGTTTGTGCTGCTATGAGGCCGTTtcatcacacatacacacacacacgcacacagacacacactccaGTCTCTTTCAGGTGTGGTTCAGTGCTGTCAGATCACCAAGTGACTGTTTTGCATGTTAAACgcaattaaaaacagaaattatatatagATATTAATGAACAGAtatgttttttcataattattttttttctcgtgTATAACAGAACCGGAGATGTGCATCATCTCTGCTTAAGTATGGAAATATAAATCAGATTATTCACGCAGACATACACTGATTGCATACATGAAGTGAGCGTAAAAAGAAGACACAGAAACGATGTCGGCTCTGTGGCGGTCAACATTGACATTTACATTCTAGGTATATGTAATGCTGTAGTGTTATGGTCTAAATTGCTTTTCTTTAAGATCTTATGATTTTTTGCAACTTGAAAGGATCAATCCTTTGTTTTGTGCTAGGCTTTGAAATCAATAACACTGTAATGTGAAACAGTTCATACGTCCCTATGATATAAACCTCTCCCTTCAAcaacaaaatgataaaaaaaaaattacaaaaatttcaaaaacgataaaagagaaaataaaaaggtCTATGTATTCTGCTTGTGTGTGGTAATTATATATCAGCTCATGCAGTGCCTAGGTGGCACTAAGCTTTTGACTTTGACAGTGCAAATCTGTTGGACTTTTTTGTACACCTGCTCATCAGTGTAAtggtgtttattattttatattactttaagAAATCTggtaatgtgttttgtttataaatcacAAATAAAGTTTTCTTTCATAAGTATTTAAGAGTTTTGTGTGGTTTTGTTTTTGCCCGTCTACGTGGTTAGTAAACCAGAATTGCTTTTCTGATTTAACAATACCCTGAATGCATTTTACCAAAATGTTTTATCATAAAACTGTTGCCAAAGTAAAGCTAATGTTAGAATGACAGGTCATATGTAAATGTGACCCTTACACTGGGTTCCACAAAATaacccatttttaaaaaattacattaaatttaaaattttattatttaaacacctACATTGCTTAAGCCAGCTTTAACAGCACATTTTTCAAAGATTTAAGAACGTGTTAAAAGCTCAAGaaccattttaaaatgataaagttTCCATGAAGGACAAAGATTTATTGTGAAACTATCAATGTCTAAAGAAGCGTATTTCAAAATTTTCAGTGGAC

Function

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0005887 integral component of plasma membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050202-4 Predicted to enable calcium ion binding activity. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in plasma membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000100596

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005879 lncRNA upstream 44440 21542521 ~ 21543562 (+) True XLOC_002081
TCONS_00004023 lncRNA upstream 135867 21444665 ~ 21452135 (+) False XLOC_002078
TCONS_00005877 lncRNA upstream 379802 21179484 ~ 21208200 (+) False XLOC_002074
TCONS_00005878 lncRNA upstream 398866 21179547 ~ 21189136 (+) True XLOC_002074
TCONS_00005876 lncRNA upstream 481292 21103921 ~ 21106710 (+) True XLOC_002073
TCONS_00004040 lncRNA downstream 21691 21670863 ~ 21672339 (+) False XLOC_002085
TCONS_00004041 lncRNA downstream 22047 21671219 ~ 21674300 (+) False XLOC_002085
TCONS_00004043 lncRNA downstream 23081 21672253 ~ 21674458 (+) True XLOC_002085
TCONS_00005705 lncRNA downstream 96090 21745262 ~ 21745505 (+) True XLOC_002088
TCONS_00004074 lncRNA downstream 218135 21867307 ~ 21868226 (+) False XLOC_002089
TCONS_00004026 mRNA upstream 57327 21522545 ~ 21530675 (+) True XLOC_002080
TCONS_00004025 mRNA upstream 66495 21511495 ~ 21521507 (+) True XLOC_002079
TCONS_00004022 mRNA upstream 117409 21444654 ~ 21470593 (+) False XLOC_002078
TCONS_00004024 mRNA upstream 117412 21444665 ~ 21470590 (+) True XLOC_002078
TCONS_00004017 mRNA upstream 144118 21434717 ~ 21443884 (+) False XLOC_002078
TCONS_00004034 mRNA downstream 1656 21650828 ~ 21820057 (+) False XLOC_002083
TCONS_00004035 mRNA downstream 7482 21656654 ~ 21820057 (+) False XLOC_002083
TCONS_00004036 mRNA downstream 11275 21660447 ~ 21820057 (+) False XLOC_002083
TCONS_00004037 mRNA downstream 19434 21668606 ~ 21676419 (+) True XLOC_002084
TCONS_00004044 mRNA downstream 27886 21677058 ~ 21699175 (+) False XLOC_002083
TCONS_00004021 other upstream 144590 21440978 ~ 21443412 (+) False XLOC_002078
TCONS_00004018 other upstream 144890 21434790 ~ 21443112 (+) False XLOC_002078
TCONS_00004019 other upstream 150692 21434791 ~ 21437310 (+) False XLOC_002078
TCONS_00004020 other upstream 152026 21434794 ~ 21435976 (+) False XLOC_002078
TCONS_00004015 other upstream 185836 21399715 ~ 21402166 (+) True XLOC_002077
TCONS_00004038 other downstream 21659 21670831 ~ 21674289 (+) False XLOC_002085
TCONS_00004039 other downstream 21685 21670857 ~ 21673021 (+) False XLOC_002085
TCONS_00004042 other downstream 22050 21671222 ~ 21674289 (+) False XLOC_002085
TCONS_00004046 other downstream 52379 21701551 ~ 21818605 (+) False XLOC_002083
TCONS_00004047 other downstream 52379 21701551 ~ 21820057 (+) False XLOC_002083

Expression Profile

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