RNA id: TU1287062


Basic Information

Item Value
RNA id TU1287062
length 544
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G1131041
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 97189284 ~ 97189931 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgaatcccaccactgactgaccagctgagaacactgtactgtagaatcccaccactgactgaccagctgagaacactgtactgtagaatcccaccactgactgaccagcaggaccagctgagaacactgtactgtagaatcccaccactcagtgcttaatttgagccggATTCTGCCGGAACAGGATCCTGTACCTCTCAGTTTTGGAGTATTTAGTTCTAGAACCCATTTACCAGGATCCTGTACCTCTCAGTTTTGGACTATTTAGTTCTAGAACCCATTTACCAGGAACCTGTACCTCTCCTGGCATGACTTTTTTTTCACTGTTTGCAAAGTAACAATTCTAATAAAAGTAATCAAAGTGAATTAATGTTGACTCCACTGTAATTCTCCATGATACAttcaaatacatttgccaaagttacagaattactgctgtctgttcagaaataaatgaaATTATTCCGAGTACTACACCAGGAGTAGGACTATAATTTAGACACAGATCATCAatagtttattattttaaaatagccaagctgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1287035 lncRNA downstream 28796 97159744 ~ 97160488 (-) True G1131021
TU1287031 lncRNA downstream 43108 97145721 ~ 97146176 (-) True G1131017
TU1287029 lncRNA downstream 43772 97144019 ~ 97145512 (-) True G1131016
TU1287021 lncRNA downstream 50364 97138689 ~ 97138920 (-) True G1131009
TU1287019 lncRNA downstream 67806 97121180 ~ 97121478 (-) True G1131007
TU1287065 lncRNA upstream 732 97190663 ~ 97191704 (-) True G1131043
TU1287069 lncRNA upstream 13947 97203878 ~ 97204370 (-) True G1131047
TU1287114 lncRNA upstream 96830 97286761 ~ 97288942 (-) False G1131083
TU1287115 lncRNA upstream 96830 97286761 ~ 97290818 (-) True G1131083
TU1287288 lncRNA upstream 119129 97309060 ~ 97353629 (-) True G1131208
XM_036939561.1 mRNA downstream 26147 97158018 ~ 97163137 (-) False LOC118936515
XM_036939398.1 mRNA downstream 31234 97152318 ~ 97158050 (-) True LOC110538850
XM_036939397.1 mRNA downstream 52150 97078111 ~ 97137134 (-) False LOC110515892
XM_036939392.1 mRNA downstream 145876 96898792 ~ 97043408 (-) False LOC110519445
XM_036939391.1 mRNA downstream 145895 96898792 ~ 97043389 (-) False LOC110519445
XM_036939401.1 mRNA upstream 116648 97306579 ~ 97320822 (-) True LOC118937807
XM_036939403.1 mRNA upstream 158203 97348134 ~ 97355956 (-) True LOC110539048
XM_021625768.2 mRNA upstream 188408 97378339 ~ 97386199 (-) True LOC110538791
XM_036939404.1 mRNA upstream 204697 97394628 ~ 97399459 (-) True LOC110539046
XM_036939405.1 mRNA upstream 224641 97414572 ~ 97424333 (-) True LOC118937808
TU1287026 other downstream 26180 97158419 ~ 97163104 (-) True LOC118936515
TU1286954 other downstream 82528 97103490 ~ 97106756 (-) True LOC110515892
TU1286950 other downstream 207344 96976175 ~ 96981940 (-) True LOC110519445
TU1286930 other downstream 321861 96862143 ~ 96867423 (-) True LOC110487147
TU1286846 other downstream 473649 96714791 ~ 96715635 (-) True LOC110518479
TU1287311 other upstream 188617 97378548 ~ 97416568 (-) True G1131229
TU1287312 other upstream 193169 97383100 ~ 97424120 (-) True G1131230
TU1287338 other upstream 240154 97430085 ~ 97433418 (-) True G1131255
TU1287354 other upstream 271882 97461813 ~ 97462271 (-) True G1131270
TU1287396 other upstream 369742 97559673 ~ 97566188 (-) True LOC110538805

Expression Profile