RNA id: TCONS_00042357


Basic Information

Item Value
RNA id TCONS_00042357
length 318
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id XLOC_020985
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 13187861 ~ 13188332 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTCCTTCACTTTAACTGTACAGAGCAGACTATTTTGCTAAATATCTGTATCATTCCATGAAAAAAAAGAGGGTGTTTATTTTCTCATCTCACGGTTTAAGCAACTGGAAACCAACGAGATGACAGAATTATCGTTTTCAGCCACGGCGATGACCTCTCGGCAGTCTCGCAGCAAGTTCACTGTGAAAACACCCAGCAGTCGCATTCACTCCCATCTGAACGAACAATGTACTTGTCAAACGCACACCTTGAGTACACAACCGATGCAGACACACTTTGTTCTAAACACACCTGGCCAAAGCGAAGAGTGACATCAAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042356 lncRNA downstream 222984 12958222 ~ 12964877 (-) True XLOC_020981
TCONS_00042355 lncRNA downstream 237569 12949820 ~ 12950292 (-) True XLOC_020980
TCONS_00041267 lncRNA downstream 247152 12933560 ~ 12940709 (-) True XLOC_020979
TCONS_00041942 lncRNA downstream 253144 12933290 ~ 12934717 (-) False XLOC_020979
TCONS_00042354 lncRNA downstream 401420 12777889 ~ 12786441 (-) True XLOC_020975
TCONS_00042358 lncRNA upstream 13146 13201478 ~ 13244142 (-) False XLOC_020986
TCONS_00041271 lncRNA upstream 30533 13218865 ~ 13238671 (-) False XLOC_020986
TCONS_00041943 lncRNA upstream 30533 13218865 ~ 13244231 (-) False XLOC_020986
TCONS_00041272 lncRNA upstream 30533 13218865 ~ 13244551 (-) True XLOC_020986
TCONS_00042359 lncRNA upstream 112116 13300448 ~ 13350327 (-) True XLOC_020987
TCONS_00041269 mRNA downstream 22675 13046270 ~ 13165186 (-) True XLOC_020983
TCONS_00041268 mRNA downstream 144869 12979213 ~ 13042992 (-) True XLOC_020982
TCONS_00041265 mRNA downstream 262120 12911236 ~ 12925741 (-) True XLOC_020978
TCONS_00041264 mRNA downstream 296940 12870275 ~ 12890921 (-) True XLOC_020977
TCONS_00041262 mRNA downstream 325446 12831675 ~ 12862415 (-) False XLOC_020976
TCONS_00041273 mRNA upstream 88361 13276693 ~ 13350356 (-) False XLOC_020987
TCONS_00041274 mRNA upstream 94145 13282477 ~ 13350240 (-) False XLOC_020987
TCONS_00041277 mRNA upstream 270403 13458735 ~ 13544244 (-) False XLOC_020989
TCONS_00041278 mRNA upstream 274652 13462984 ~ 13466246 (-) True XLOC_020989
TCONS_00041279 mRNA upstream 450254 13638586 ~ 13649588 (-) False XLOC_020991
TCONS_00041270 other downstream 75539 13101736 ~ 13112322 (-) True XLOC_020984
TCONS_00041266 other downstream 253272 12933485 ~ 12934589 (-) False XLOC_020979
TCONS_00041252 other downstream 561756 12617149 ~ 12626105 (-) False XLOC_020970
TCONS_00041253 other downstream 561782 12624266 ~ 12626079 (-) False XLOC_020970
TCONS_00041251 other downstream 576560 12607333 ~ 12611301 (-) False XLOC_020970
TCONS_00041280 other upstream 523102 13711434 ~ 13716397 (-) False XLOC_020993
TCONS_00041282 other upstream 523102 13711434 ~ 13716585 (-) False XLOC_020993
TCONS_00041281 other upstream 523102 13711434 ~ 13716585 (-) False XLOC_020993
TCONS_00041283 other upstream 524260 13712592 ~ 13716020 (-) False XLOC_020993
TCONS_00041284 other upstream 527044 13715376 ~ 13716067 (-) False XLOC_020993

Expression Profile

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