RNA id: TCONS_00041276



Basic Information


Item Value
RNA id TCONS_00041276
length 1172
lncRNA type lincRNA
GC content 0.41
exon number 4
gene id XLOC_020988
representative False

Chromosome Information


Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 13422568 ~ 13431304 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


aaataacTTACACAGAACATTCCCTATAagcatttcagtttatttattgtaACCATAAAATGATGTTTCCggaaggtttattttatttattttttttgtaggttATAATTTCACTACTTaaacaaattcaattaaaaataacatttttaattaagcCTACTTATTTCTTTTAACTCTGTATTTGAAATGAACACCAAATAATTCCTCACAAGCTATGCTAGCAGTCAATTAACCATTTTAGCCAGTAATGATTCCTCTTGAAGTATTCGTGTTAGCAAAATGACATCTTAAAATAAACAACATCTGACAGATTCATTATTCAGTTGTCACCTCTCTTCAAAAACCTCTCTCCTAAGGTAACATTTGCTCGGCCTGGAGAATTGAGATGAAAAACATCACTAGTCAGCTGACGCGAGCGACTGTTAACAACGCTAACACCAATTACTCACACCTGAGAGTCAAAAAGAAACGGTTCGCGCTGACAGGCGGAGAAATGGAAGTGAAAAAGAAGACACCAAATTACCAGGCGGCTTTATCTGCGCACTTCCAGGTCTTCGTGGTCGGATGAGTGACTTTTATCCGGCAATCAGCTCGAAAGATGAAGAAAATGGCATTTTTTAACAGCCTGAGCTACAATTTGAGGGATGCAGCGAGAGGTTTGGATGTTCTGTATGGATGCGACAGAGGCAGGCAGCCAAAGCAACGTCGGATGATGAGCATGAGTGAGATAGTACACTTTGATAGTGAGGACAGCCGATATATTCTGGCACCAGTCCAAGCATGCTGAGAGGAACGGATGACCTGCGTCAAAAATGGTGCTGGCAACTGTAACATCTGCGTAGGAGGCCGAATGGTCCTTTGCAAGTGAAGAGCTGCACTCCACTGTTCCTACCTCAAACCATAAATGGATAAGCATATGGACCCTGGCTTCAAGGAGAGCAAAGACTGCAGGAATTAATTCAATCATACTTTCACCGGGATGGGGTATATGAACAAATGGCACTGGAATAACTGGAGGCTATTTGATGCTAGCCCACTACATCCGACCCAAAGGTATGCATTTTCATGAGGATTTGATGCTTTGTTATTGCAGTTGTCCACTGGTCCTTGATTGATTTTGCCTCATTGGCATTCACAATTTCCTGTCCTTTTGTAATCGCCCTTAAATAGAC

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000194253

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00042359 lncRNA downstream 72241 13300448 ~ 13350327 (-) True XLOC_020987
TCONS_00041272 lncRNA downstream 178017 13218865 ~ 13244551 (-) True XLOC_020986
TCONS_00041943 lncRNA downstream 178337 13218865 ~ 13244231 (-) False XLOC_020986
TCONS_00042358 lncRNA downstream 178426 13201478 ~ 13244142 (-) False XLOC_020986
TCONS_00041271 lncRNA downstream 183897 13218865 ~ 13238671 (-) False XLOC_020986
TCONS_00041944 lncRNA upstream 174977 13606281 ~ 13607563 (-) True XLOC_020990
TCONS_00042360 lncRNA upstream 207546 13638850 ~ 13649604 (-) True XLOC_020991
TCONS_00042361 lncRNA upstream 237681 13668985 ~ 13693627 (-) True XLOC_020992
TCONS_00042362 lncRNA upstream 844442 14275746 ~ 14298602 (-) False XLOC_021001
TCONS_00041301 lncRNA upstream 844519 14275823 ~ 14295103 (-) True XLOC_021001
TCONS_00041273 mRNA downstream 72212 13276693 ~ 13350356 (-) False XLOC_020987
TCONS_00041274 mRNA downstream 72328 13282477 ~ 13350240 (-) False XLOC_020987
TCONS_00041269 mRNA downstream 257382 13046270 ~ 13165186 (-) True XLOC_020983
TCONS_00041268 mRNA downstream 379576 12979213 ~ 13042992 (-) True XLOC_020982
TCONS_00041265 mRNA downstream 496827 12911236 ~ 12925741 (-) True XLOC_020978
TCONS_00041277 mRNA upstream 27431 13458735 ~ 13544244 (-) False XLOC_020989
TCONS_00041278 mRNA upstream 31680 13462984 ~ 13466246 (-) True XLOC_020989
TCONS_00041279 mRNA upstream 207282 13638586 ~ 13649588 (-) False XLOC_020991
TCONS_00041287 mRNA upstream 414826 13846130 ~ 13857729 (-) False XLOC_020994
TCONS_00041288 mRNA upstream 415832 13847136 ~ 13851297 (-) True XLOC_020994
TCONS_00041270 other downstream 310246 13101736 ~ 13112322 (-) True XLOC_020984
TCONS_00041266 other downstream 487979 12933485 ~ 12934589 (-) False XLOC_020979
TCONS_00041252 other downstream 796463 12617149 ~ 12626105 (-) False XLOC_020970
TCONS_00041253 other downstream 796489 12624266 ~ 12626079 (-) False XLOC_020970
TCONS_00041251 other downstream 811267 12607333 ~ 12611301 (-) False XLOC_020970
TCONS_00041280 other upstream 280130 13711434 ~ 13716397 (-) False XLOC_020993
TCONS_00041282 other upstream 280130 13711434 ~ 13716585 (-) False XLOC_020993
TCONS_00041281 other upstream 280130 13711434 ~ 13716585 (-) False XLOC_020993
TCONS_00041283 other upstream 281288 13712592 ~ 13716020 (-) False XLOC_020993
TCONS_00041284 other upstream 284072 13715376 ~ 13716067 (-) False XLOC_020993

Expression Profile


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