RNA id: TU1287955


Basic Information

Item Value
RNA id TU1287955
length 506
lncRNA type antisense_over
GC content 0.37
exon number 1
gene id G1131669
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 97792873 ~ 97793378 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCCAAACGAACCACTTCCAATTTTTCTGCCCAGTCTGTATCGGTTTCCCACTCTCAATTCCATGATTGACAATTtacagctagcaagctagctcaAAATCCACAAAAAAAATGTTGGAGGCAAAAGTCCCAAAAAGTTTTAgtccaaatatattttttaaaggcaaAATTATTTCCAGAAAcggtttatttttctctctcttctttctgctTCCCGTAGTCTATCTATCCggatatagtaacactgtccctAGCTACAATCCAACAAACTATCTTTCACCTCTCTTTTTAAAACAATCCTAATGTCATAAAATCATAATACTGGGTTTGTTTTGAAGGTTAACGTGTGTAGTTTATGCTCTTGCTATTTTCAATATCATCCCGAATTGCTTTTCCCGAAGATGAAGATGGATTTTGAAGACGTTGCCCTTGTATTTTTTTGCTATGTTCTTTTACCACTGTCTCTGCGTCTGGCTTTTTCCACATAGTTAATATGCGACTTCTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1287988 lncRNA downstream 8139 97784443 ~ 97784734 (-) True G1131702
TU1287987 lncRNA downstream 9498 97783165 ~ 97783375 (-) True G1131701
TU1287929 lncRNA downstream 83352 97708788 ~ 97709521 (-) True G1131653
TU1287913 lncRNA downstream 133499 97658540 ~ 97659374 (-) True G1131639
TU1287901 lncRNA downstream 160386 97630348 ~ 97632487 (-) True G1131628
TU1287991 lncRNA upstream 4829 97798207 ~ 97798453 (-) True G1131705
TU1287995 lncRNA upstream 14553 97807931 ~ 97808469 (-) True G1131707
TU1287996 lncRNA upstream 15537 97808915 ~ 97809152 (-) True G1131708
TU1287997 lncRNA upstream 24709 97818087 ~ 97818632 (-) False G1131709
TU1288000 lncRNA upstream 24709 97818087 ~ 97818632 (-) True G1131709
XM_036939414.1 mRNA downstream 5649 97764189 ~ 97787224 (-) False LOC110538882
XM_036939413.1 mRNA downstream 10014 97764189 ~ 97782859 (-) False LOC110538882
XM_036939415.1 mRNA downstream 51902 97715738 ~ 97740971 (-) True LOC110538885
XM_036939409.1 mRNA downstream 77618 97620303 ~ 97715255 (-) True LOC110539076
XM_036939412.1 mRNA downstream 138722 97620303 ~ 97654151 (-) False LOC110539076
XM_036939419.1 mRNA upstream 72276 97865654 ~ 97878576 (-) False LOC110487093
XM_036939423.1 mRNA upstream 124359 97917737 ~ 97943870 (-) False LOC110487090
XM_036939424.1 mRNA upstream 124359 97917737 ~ 97943871 (-) True LOC110487090
XM_021559005.2 mRNA upstream 153900 97947278 ~ 97949231 (-) True LOC110487083
XM_036939425.1 mRNA upstream 166375 97959753 ~ 97974748 (-) False LOC110485313
TU1287960 other downstream 10050 97778655 ~ 97782823 (-) True LOC110538882
TU1287932 other downstream 79757 97712634 ~ 97713116 (-) True G1131656
TU1287396 other downstream 226685 97559673 ~ 97566188 (-) True LOC110538805
TU1287354 other downstream 330602 97461813 ~ 97462271 (-) True G1131270
TU1287338 other downstream 359455 97430085 ~ 97433418 (-) True G1131255
TU1288015 other upstream 59408 97852786 ~ 97853593 (-) True G1131720
TU1287949 other upstream 64221 97857599 ~ 97860518 (-) True G1131666
TU1287948 other upstream 166414 97959792 ~ 97974720 (-) True LOC110485313
TU1288159 other upstream 465504 98258882 ~ 98259687 (-) True LOC118936513
TU1288236 other upstream 589592 98382970 ~ 98383815 (-) True G1131863

Expression Profile