RNA id: TU1288015


Basic Information

Item Value
RNA id TU1288015
length 727
RNA type TUCP
GC content 0.44
exon number 2
gene id G1131720
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 97852786 ~ 97853593 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGTGTTTGGATGCAGCAGGTGGATTATAGTTAATGCATTATTTCTGTATAAACGCAGTCAGACATTTGGCAGTAGCTGTTACATACAGAAACCCAAGcagagaacttacagaaaccccagccatctcagagaacttacagaaaccccagccatctcagagaacttacagaaaccccagccatctcagagaacttacagaaaccccagccatctcagagaacttacagaaaccccagccatttcagagaacttacagaaaccccagccatttcagagaacttacagaaaccccagccatctcagagaacttacagaaacccaagcagagaacttacagaaacccaaacagagaacttacagaaacccaagccatctcagagaacttacagaaaccccagccatctcagagaacttacagaaaccccagccatctcagagaacttacagaaaccccagccatctcagagaacttacagaaaccccagccatctcagagaacttacagaaaccccagccatctcagagaacttacagaaaccccagccatctcagagaacttacagaaacccaagccatctcagagaacttacagaaacccaagccatctcagagaacttacagacacccaagccatctcagagaacttacagaaacccaagccatctcagagaacttacagaaaacatcaaagtggaagaaaaattctaacttgtattttgtattttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1288014 lncRNA downstream 567 97851756 ~ 97852219 (-) True G1131719
TU1288013 lncRNA downstream 1547 97850936 ~ 97851239 (-) True G1131718
TU1287970 lncRNA downstream 4626 97846731 ~ 97848160 (-) True G1131684
TU1287961 lncRNA downstream 11957 97840385 ~ 97840829 (-) True G1131675
TU1288004 lncRNA downstream 25334 97827241 ~ 97827452 (-) True G1131713
TU1288016 lncRNA upstream 4 97853597 ~ 97853796 (-) True G1131721
TU1288017 lncRNA upstream 959 97854552 ~ 97854804 (-) True G1131722
TU1288018 lncRNA upstream 1855 97855448 ~ 97855904 (-) True G1131723
TU1288019 lncRNA upstream 2936 97856529 ~ 97856735 (-) True G1131724
TU1287957 lncRNA upstream 10136 97863729 ~ 97864327 (-) True G1131671
XM_036939414.1 mRNA downstream 65562 97764189 ~ 97787224 (-) False LOC110538882
XM_036939413.1 mRNA downstream 69927 97764189 ~ 97782859 (-) False LOC110538882
XM_036939415.1 mRNA downstream 111815 97715738 ~ 97740971 (-) True LOC110538885
XM_036939409.1 mRNA downstream 137531 97620303 ~ 97715255 (-) True LOC110539076
XM_036939412.1 mRNA downstream 198635 97620303 ~ 97654151 (-) False LOC110539076
XM_036939419.1 mRNA upstream 12061 97865654 ~ 97878576 (-) False LOC110487093
XM_036939423.1 mRNA upstream 64144 97917737 ~ 97943870 (-) False LOC110487090
XM_036939424.1 mRNA upstream 64144 97917737 ~ 97943871 (-) True LOC110487090
XM_021559005.2 mRNA upstream 93685 97947278 ~ 97949231 (-) True LOC110487083
XM_036939425.1 mRNA upstream 106160 97959753 ~ 97974748 (-) False LOC110485313
TU1287960 other downstream 69963 97778655 ~ 97782823 (-) True LOC110538882
TU1287932 other downstream 139670 97712634 ~ 97713116 (-) True G1131656
TU1287396 other downstream 286598 97559673 ~ 97566188 (-) True LOC110538805
TU1287354 other downstream 390515 97461813 ~ 97462271 (-) True G1131270
TU1287338 other downstream 419368 97430085 ~ 97433418 (-) True G1131255
TU1287949 other upstream 4006 97857599 ~ 97860518 (-) True G1131666
TU1287948 other upstream 106199 97959792 ~ 97974720 (-) True LOC110485313
TU1288159 other upstream 405289 98258882 ~ 98259687 (-) True LOC118936513
TU1288236 other upstream 529377 98382970 ~ 98383815 (-) True G1131863
TU1288904 other upstream 1153034 99006627 ~ 99010112 (-) True G1132328

Expression Profile