RNA id: TCONS_00041944


Basic Information

Item Value
RNA id TCONS_00041944
length 255
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id XLOC_020990
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 13606281 ~ 13607563 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTAACTAAAGAACTCTAAACACAACATGATTTTATTCCACAGGTCTTCTCTAGGGGAAAGTGGAAACCATACCAGAATGGAACTATACTTGGAGTTCACCCTTGAAAGCATCTTCACATTTTCTGAAGATGTGGCTTCACCTTTGCTGGAACTGAAGGTgccttttttttgtctgtttctcTCCTTTCTTTCTATTCCcgtcttttatctttttttcctcTCACTCAGCCTTTCTTCCCAAAGCTTTGCTCCTAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00041276 lncRNA downstream 174977 13422568 ~ 13431304 (-) False XLOC_020988
TCONS_00041275 lncRNA downstream 174977 13422568 ~ 13431304 (-) True XLOC_020988
TCONS_00042359 lncRNA downstream 255954 13300448 ~ 13350327 (-) True XLOC_020987
TCONS_00041272 lncRNA downstream 361730 13218865 ~ 13244551 (-) True XLOC_020986
TCONS_00041943 lncRNA downstream 362050 13218865 ~ 13244231 (-) False XLOC_020986
TCONS_00042360 lncRNA upstream 31287 13638850 ~ 13649604 (-) True XLOC_020991
TCONS_00042361 lncRNA upstream 61422 13668985 ~ 13693627 (-) True XLOC_020992
TCONS_00042362 lncRNA upstream 668183 14275746 ~ 14298602 (-) False XLOC_021001
TCONS_00041301 lncRNA upstream 668260 14275823 ~ 14295103 (-) True XLOC_021001
TCONS_00042363 lncRNA upstream 692237 14299800 ~ 14301873 (-) True XLOC_021002
TCONS_00041277 mRNA downstream 62037 13458735 ~ 13544244 (-) False XLOC_020989
TCONS_00041278 mRNA downstream 140035 13462984 ~ 13466246 (-) True XLOC_020989
TCONS_00041273 mRNA downstream 255925 13276693 ~ 13350356 (-) False XLOC_020987
TCONS_00041274 mRNA downstream 256041 13282477 ~ 13350240 (-) False XLOC_020987
TCONS_00041269 mRNA downstream 441095 13046270 ~ 13165186 (-) True XLOC_020983
TCONS_00041279 mRNA upstream 31023 13638586 ~ 13649588 (-) False XLOC_020991
TCONS_00041287 mRNA upstream 238567 13846130 ~ 13857729 (-) False XLOC_020994
TCONS_00041288 mRNA upstream 239573 13847136 ~ 13851297 (-) True XLOC_020994
TCONS_00041291 mRNA upstream 476166 14083729 ~ 14115292 (-) False XLOC_020997
TCONS_00041292 mRNA upstream 476473 14084036 ~ 14115316 (-) False XLOC_020997
TCONS_00041270 other downstream 493959 13101736 ~ 13112322 (-) True XLOC_020984
TCONS_00041266 other downstream 671692 12933485 ~ 12934589 (-) False XLOC_020979
TCONS_00041252 other downstream 980176 12617149 ~ 12626105 (-) False XLOC_020970
TCONS_00041253 other downstream 980202 12624266 ~ 12626079 (-) False XLOC_020970
TCONS_00041251 other downstream 994980 12607333 ~ 12611301 (-) False XLOC_020970
TCONS_00041280 other upstream 103871 13711434 ~ 13716397 (-) False XLOC_020993
TCONS_00041282 other upstream 103871 13711434 ~ 13716585 (-) False XLOC_020993
TCONS_00041281 other upstream 103871 13711434 ~ 13716585 (-) False XLOC_020993
TCONS_00041283 other upstream 105029 13712592 ~ 13716020 (-) False XLOC_020993
TCONS_00041284 other upstream 107813 13715376 ~ 13716067 (-) False XLOC_020993

Expression Profile

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