RNA id: TCONS_00042360


Basic Information

Item Value
RNA id TCONS_00042360
length 325
lncRNA type sense_over
GC content 0.48
exon number 3
gene id XLOC_020991
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 13638586 ~ 13649604 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACATCATTCACGAGGACGGACCCCGCAGACTCTGCTCCAGTTGAACACCCTCCTCGAGGCGACCCGCTTGAAAGATGATTACAAAAACTGTGTCAACTTGCTTCATTTTGTAAACAAGTGGCGACATGAACTGAAGTGTTGCAGCCCTGTGACGCTATATAGGACACTTTGGGACTTGGCTGTCTACATCAACATGGTGTAAACAAACAAGAATGGGTCCACCACACTGAGACGATCAGGATGGCTTTTACAGTGCTAAATTGAGAGGAAAACTGGAACTGCTAGCAACCGAGAAAAGGAATTTCCAAACCAGCGCAGAGCCCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00041944 lncRNA downstream 31287 13606281 ~ 13607563 (-) True XLOC_020990
TCONS_00041276 lncRNA downstream 207546 13422568 ~ 13431304 (-) False XLOC_020988
TCONS_00041275 lncRNA downstream 207546 13422568 ~ 13431304 (-) True XLOC_020988
TCONS_00042359 lncRNA downstream 288523 13300448 ~ 13350327 (-) True XLOC_020987
TCONS_00041272 lncRNA downstream 394299 13218865 ~ 13244551 (-) True XLOC_020986
TCONS_00042361 lncRNA upstream 19381 13668985 ~ 13693627 (-) True XLOC_020992
TCONS_00042362 lncRNA upstream 626142 14275746 ~ 14298602 (-) False XLOC_021001
TCONS_00041301 lncRNA upstream 626219 14275823 ~ 14295103 (-) True XLOC_021001
TCONS_00042363 lncRNA upstream 650196 14299800 ~ 14301873 (-) True XLOC_021002
TCONS_00042364 lncRNA upstream 682846 14332450 ~ 14334135 (-) True XLOC_021004
TCONS_00041277 mRNA downstream 94606 13458735 ~ 13544244 (-) False XLOC_020989
TCONS_00041278 mRNA downstream 172604 13462984 ~ 13466246 (-) True XLOC_020989
TCONS_00041273 mRNA downstream 288494 13276693 ~ 13350356 (-) False XLOC_020987
TCONS_00041274 mRNA downstream 288610 13282477 ~ 13350240 (-) False XLOC_020987
TCONS_00041269 mRNA downstream 473664 13046270 ~ 13165186 (-) True XLOC_020983
TCONS_00041287 mRNA upstream 196526 13846130 ~ 13857729 (-) False XLOC_020994
TCONS_00041288 mRNA upstream 197532 13847136 ~ 13851297 (-) True XLOC_020994
TCONS_00041291 mRNA upstream 434125 14083729 ~ 14115292 (-) False XLOC_020997
TCONS_00041292 mRNA upstream 434432 14084036 ~ 14115316 (-) False XLOC_020997
TCONS_00041294 mRNA upstream 477868 14127472 ~ 14128716 (-) True XLOC_020998
TCONS_00041270 other downstream 526528 13101736 ~ 13112322 (-) True XLOC_020984
TCONS_00041266 other downstream 704261 12933485 ~ 12934589 (-) False XLOC_020979
TCONS_00041252 other downstream 1012745 12617149 ~ 12626105 (-) False XLOC_020970
TCONS_00041253 other downstream 1012771 12624266 ~ 12626079 (-) False XLOC_020970
TCONS_00041251 other downstream 1027549 12607333 ~ 12611301 (-) False XLOC_020970
TCONS_00041280 other upstream 61830 13711434 ~ 13716397 (-) False XLOC_020993
TCONS_00041282 other upstream 61830 13711434 ~ 13716585 (-) False XLOC_020993
TCONS_00041281 other upstream 61830 13711434 ~ 13716585 (-) False XLOC_020993
TCONS_00041283 other upstream 62988 13712592 ~ 13716020 (-) False XLOC_020993
TCONS_00041284 other upstream 65772 13715376 ~ 13716067 (-) False XLOC_020993

Expression Profile

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